mRNA_Ecto-sp13_S_contig12557.2117.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12557.2117.1
Unique NamemRNA_Ecto-sp13_S_contig12557.2117.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12557.2117.1 vs. uniprot
Match: A0A6H5KM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM79_9PHAE)

HSP 1 Score: 799 bits (2064), Expect = 3.960e-287
Identity = 402/432 (93.06%), Postives = 413/432 (95.60%), Query Frame = 1 
Query:  220 GPKGLTSLSAGSASVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPGVYYPLEAWDFGPPKHWNPIDKSDKPSRMLSSRSFNAKMTWGEATMPRPPNPAKAAQIPTKEERAWLSKRRGSARPSTAPRCMWLNGVSTRGGLQAWGDVATNAGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVKAFVASAKGRAASDEKSSGAKNGMVRGGDRQSRPSTAPAQRLSIPLKGRESPGPAYALPSDFDQNFVNKKTFRPPRSSGTSPFGTEEPRGTGRSANLAPRADENGHVRAKKMKRLPKARREASSGPVAKSGRADAISRALGVPVNTCMGRGILLRIRADGM 1515
            G  GLTSLSAG+A VSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGP VYYP EAWDFGPPKHWN ++KSDKP RM SSRSFNAK+TWGEATMPRPPNP KAAQIPTKEERAWLSKRRG+ARPSTAPRCMWLNGV+TRGGLQAWGDVATN GPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATV A VASAKGRAAS EK+SGAKNGMVRGGDRQSRPSTAP+QRLSIPLKGRESPGPAYALPSDFDQ FVNKKTF PPR +GTSPFGTEEPRGTGRSANLAPRADE+GHVRAK+ KRLPKARREASSGPVAKSGR DAI RALGVPVNTCMGRGILLRIRADGM
Sbjct:  107 GTAGLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPAVYYPHEAWDFGPPKHWNRVNKSDKPGRMPSSRSFNAKVTWGEATMPRPPNPVKAAQIPTKEERAWLSKRRGTARPSTAPRCMWLNGVNTRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVNAMVASAKGRAASYEKTSGAKNGMVRGGDRQSRPSTAPSQRLSIPLKGRESPGPAYALPSDFDQKFVNKKTFHPPRCTGTSPFGTEEPRGTGRSANLAPRADEDGHVRAKQTKRLPKARREASSGPVAKSGRVDAIGRALGVPVNTCMGRGILLRIRADGM 538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12557.2117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KM79_9PHAE3.960e-28793.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12557contigEcto-sp13_S_contig12557:225..3427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1515
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_004790.1
Cds size1515
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.5642347-CDS-Ecto-sp13_S_contig12557:224..4521681462669.5642347-CDS-Ecto-sp13_S_contig12557:224..452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12557 225..452 +
1681462669.5732653-CDS-Ecto-sp13_S_contig12557:1330..14171681462669.5732653-CDS-Ecto-sp13_S_contig12557:1330..1417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12557 1331..1417 +
1681462669.58151-CDS-Ecto-sp13_S_contig12557:2001..23631681462669.58151-CDS-Ecto-sp13_S_contig12557:2001..2363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12557 2002..2363 +
1681462669.5896986-CDS-Ecto-sp13_S_contig12557:2589..34271681462669.5896986-CDS-Ecto-sp13_S_contig12557:2589..3427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12557 2590..3427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12557.2117.1prot_Ecto-sp13_S_contig12557.2117.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12557 225..3427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12557.2117.1

>prot_Ecto-sp13_S_contig12557.2117.1 ID=prot_Ecto-sp13_S_contig12557.2117.1|Name=mRNA_Ecto-sp13_S_contig12557.2117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=505bp
MVLFGAYHTAERFFDDDRLTSHFPGPGSYSLKSTVEGVSTSRYARKLVED
GSVRPDGSAILFRERDCWVRGGEGPKGLTSLSAGSASVSPATYTTQPGER
AVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPGVYYPLEA
WDFGPPKHWNPIDKSDKPSRMLSSRSFNAKMTWGEATMPRPPNPAKAAQI
PTKEERAWLSKRRGSARPSTAPRCMWLNGVSTRGGLQAWGDVATNAGPIH
VGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDL
TRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVKAFVAS
AKGRAASDEKSSGAKNGMVRGGDRQSRPSTAPAQRLSIPLKGRESPGPAY
ALPSDFDQNFVNKKTFRPPRSSGTSPFGTEEPRGTGRSANLAPRADENGH
VRAKKMKRLPKARREASSGPVAKSGRADAISRALGVPVNTCMGRGILLRI
RADGM
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mRNA from alignment at Ecto-sp13_S_contig12557:225..3427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12557.2117.1 ID=mRNA_Ecto-sp13_S_contig12557.2117.1|Name=mRNA_Ecto-sp13_S_contig12557.2117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12557:225..3427+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGTTTGGAGCCTACCACACTGCGGAGCGCTTCTTCGATGACGA
CAGGCTAACCTCGCATTTTCCTGGACCGGGTTCGTACTCGTTAAAGTCTA
CGGTCGAGGGAGTCTCAACGTCACGGTACGCGAGGAAACTCGTGGAGGAC
GGTAGCGTAAGGCCGGACGGGAGTGCAATATTATTCAGAGAACGAGACTG
CTGGGTTAGGGGGGGCGAGGGTCCAAAGGTGAGCTTTGTCACACGGTGAT
GACGCCCTCTACTTGCTCGGTGATGAAGAGTCGACTACCATAATATCCTC
TGTCATAGCCCCCCTCCATGTCGAAGCCCCCCCCCCGCAAAAAAGTCGCG
ATGGTACCCGAAAAAACTCTGAAATAGCCCCGGTATCGTTTTTTCATTTT
TTCGCCCCTCTACCCTCGGTTTACATAGGCCCGGGGTGTTCGTTTTTGGG
CAATATTTTGGGGTGCCCCACGGGACGTTCGCACTCAAACCCAGAGGAGG
CATTCCGTTGTGGCAGCATTTCTCGTGTGTGTGACTGTTGCCGTATTAAA
TGGTGTTGGTGTTGGTGGTGTTGGTGTTGGTGTCAGTGCTGCTGCTGTGT
TCTGCGCCCGGAGCTTTTTGGCCATGGGGTTTTCCCTGTATTTTTAGAAA
CATCGCCCCTCTACCTTTGAGATAGCCCCGGCGTGTATCGTTTCACAAAA
GTAAGAAAATCGCCCCGGGAGGCTATGACAGAGGACAGTACGGTATACGG
ACAAGATAATTAGACATGCATGAAATTAGACTTCTGCTGCTGGATGGAAT
GCGGTCCATTGTCTTCCTGCCGTCTAGACTACAGACCGGCAGACCATGCA
CTGAATAGTCTAATGAATTGACATACTATATCCCTCTGGACCGATGTACA
AAACTCAATTACTCAACGATAAATAGGAGGCCAACATAAACAATAAGCTT
CCGGAAAGCTCTCGACGAGACCGTTCCAACAGCGTGTTTGTTTCGACGCC
ACCACTCCTTTTGCTGTTGAGGAATCGAGGTTTGAAAAACAAAAAGTGGA
GTTCTGATAGCGTGTTTTTCATCCTGTTCGGGAACGGGGGCCGTGTTGTG
AAACAGGGACTCACGAGCTTGTCTGCCGGCAGTGCTTCCGTCAGCCCGGC
GACATACACTACACAGCCTGGCGAGCGCGCCGTCAAAGAGAAGGTGAGGG
GGTACATAGTAGATCATCGCCGTGTACAAGAAATCGAGTGCATCGCACAG
ACTGACCGGTACGAAGGTGTACCGATTTGGTAAAAGTCAATCGACGGATA
CCGTGCTAATCGGGGCCTCCTTCTTAACACTCTCCACCCACAGGATTAAC
CCTCAGCTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATGGAAGTGT
CACAAGGTTCTTTGTAGGATCGACTCCAAGAGGTGTTCTCGGGACTGATA
CACAATGTGTCCTTGGGAAATTGTCCAAGTCAGGAGAAAAAACTTGCGCC
CAACGACATTCGAACCAGTGTCCAGCTGACGCCATGTTCGAAGGTGTACC
GTTTCTGGAAGAAGTCAATCGACGAATACCCTGTGAATCGGGGCCTCCTT
CACACCGGGGTGTGTAGGACGAGTTTTTCCTTCGCTTCCCCTATGAAAAA
AAAATCGCGCCCTCGAAACTGCAGCTGAGACAGAAAACAGCCCTTCGGCG
TTTCCCCCGCCACAGCGAACACAACACCAACAACTGACACGCGTGATCAC
CGCTTGTTCTACATCTTGGCCGTTCAGGCACCTGCCGCAGTCGTCAATAC
CCTCGAGAGCCGCTACCTCAGCCCGTCAACACGATGCCTCACACCAAGCC
ACGAACGAGAAGCAAAAGGGGCGCAGAGTCCCGGCCCGGGCGTATATTAC
CCTCTTGAGGCATGGGATTTCGGGCCACCCAAGCATTGGAACCCAATTGA
CAAGTCCGACAAGCCGAGCCGGATGCTGAGCAGTAGGAGTTTCAACGCCA
AGATGACTTGGGGCGAGGCAACCATGCCGCGTCCGCCTAACCCGGCGAAG
GCAGCACAGATTCCTACGAAGGAAGAGCGGGCGTGGCTGTCGAAAAGGCG
GGGGTCGGCTCGCCCCAGCACAGCCCCACGATGTATGTGGTAAGTCTACC
CCATGATGGTACGTGCGTTGTGGGGAACAGACGGCAGCAAGTTGTAATGT
CTCGGAACGTGCCCCTTGCTAATGTGTGTGTGAAGGCGAGACCGAAACGC
GGAATCATTTGAGCAGCACCGGTCGGACCGTGTGCAAATGTAGCGCGGCC
AGCAGTGGCTTCTACAAACATTCTTCGAACAATCCCTAAACCAAAGCAAC
TCGTGCGCGAACTAGGTTGAACGGCGTCAGTACGCGAGGGGGGCTCCAGG
CGTGGGGCGACGTTGCCACGAACGCCGGGCCAATACACGTGGGGAACAAA
GGCAACTGTGCATCACCGTGGGACCGACCAACCCCTCGGCGGGGACCCGA
CTCACAACGTCGAGGCCCGATACACTCGCGCGAGGTTCGGGCAACATCGC
CTGGTTTCCGCGAAACGCGTTACCTTAACCGCGACCTAACTCGGAAAGGA
GCGTGTAAAGCAACAGACACGCCAGGCCCCGGGCAGTATAGCATCCGTCC
TCCGTTGGAGCGCGGGACAAGTTTCGCTGGTCCCAGGCGACCAACCAAAT
GCAGCAAAGCTGCGACGGTGAAAGCTTTCGTGGCATCTGCGAAAGGCCGG
GCGGCATCAGACGAAAAGAGCAGCGGGGCGAAGAACGGAATGGTACGAGG
AGGAGACCGGCAATCACGACCGTCGACGGCGCCAGCCCAGCGTCTTTCGA
TACCGCTCAAAGGGCGAGAGAGCCCAGGCCCAGCGTACGCTTTGCCGAGC
GATTTCGACCAGAATTTTGTAAACAAGAAAACCTTCCGTCCCCCGCGGAG
CAGCGGAACGTCGCCGTTCGGGACGGAGGAGCCAAGAGGTACAGGGCGGA
GCGCAAATTTGGCTCCACGCGCCGACGAGAACGGACACGTCCGCGCGAAG
AAGATGAAGCGCCTGCCGAAAGCTCGGAGGGAGGCATCATCTGGACCTGT
GGCCAAGTCAGGGAGGGCTGACGCTATCAGTAGGGCTTTGGGAGTTCCTG
TCAACACTTGCATGGGGAGGGGCATTCTCTTGCGAATTCGTGCCGATGGC
ATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12557:225..3427+

>mRNA_Ecto-sp13_S_contig12557.2117.1 ID=mRNA_Ecto-sp13_S_contig12557.2117.1|Name=mRNA_Ecto-sp13_S_contig12557.2117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12557:225..3427+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGTTTGGAGCCTACCACACTGCGGAGCGCTTCTTCGATGACGA
CAGGCTAACCTCGCATTTTCCTGGACCGGGTTCGTACTCGTTAAAGTCTA
CGGTCGAGGGAGTCTCAACGTCACGGTACGCGAGGAAACTCGTGGAGGAC
GGTAGCGTAAGGCCGGACGGGAGTGCAATATTATTCAGAGAACGAGACTG
CTGGGTTAGGGGGGGCGAGGGTCCAAAGGGACTCACGAGCTTGTCTGCCG
GCAGTGCTTCCGTCAGCCCGGCGACATACACTACACAGCCTGGCGAGCGC
GCCGTCAAAGAGAAGGCACCTGCCGCAGTCGTCAATACCCTCGAGAGCCG
CTACCTCAGCCCGTCAACACGATGCCTCACACCAAGCCACGAACGAGAAG
CAAAAGGGGCGCAGAGTCCCGGCCCGGGCGTATATTACCCTCTTGAGGCA
TGGGATTTCGGGCCACCCAAGCATTGGAACCCAATTGACAAGTCCGACAA
GCCGAGCCGGATGCTGAGCAGTAGGAGTTTCAACGCCAAGATGACTTGGG
GCGAGGCAACCATGCCGCGTCCGCCTAACCCGGCGAAGGCAGCACAGATT
CCTACGAAGGAAGAGCGGGCGTGGCTGTCGAAAAGGCGGGGGTCGGCTCG
CCCCAGCACAGCCCCACGATGTATGTGGTTGAACGGCGTCAGTACGCGAG
GGGGGCTCCAGGCGTGGGGCGACGTTGCCACGAACGCCGGGCCAATACAC
GTGGGGAACAAAGGCAACTGTGCATCACCGTGGGACCGACCAACCCCTCG
GCGGGGACCCGACTCACAACGTCGAGGCCCGATACACTCGCGCGAGGTTC
GGGCAACATCGCCTGGTTTCCGCGAAACGCGTTACCTTAACCGCGACCTA
ACTCGGAAAGGAGCGTGTAAAGCAACAGACACGCCAGGCCCCGGGCAGTA
TAGCATCCGTCCTCCGTTGGAGCGCGGGACAAGTTTCGCTGGTCCCAGGC
GACCAACCAAATGCAGCAAAGCTGCGACGGTGAAAGCTTTCGTGGCATCT
GCGAAAGGCCGGGCGGCATCAGACGAAAAGAGCAGCGGGGCGAAGAACGG
AATGGTACGAGGAGGAGACCGGCAATCACGACCGTCGACGGCGCCAGCCC
AGCGTCTTTCGATACCGCTCAAAGGGCGAGAGAGCCCAGGCCCAGCGTAC
GCTTTGCCGAGCGATTTCGACCAGAATTTTGTAAACAAGAAAACCTTCCG
TCCCCCGCGGAGCAGCGGAACGTCGCCGTTCGGGACGGAGGAGCCAAGAG
GTACAGGGCGGAGCGCAAATTTGGCTCCACGCGCCGACGAGAACGGACAC
GTCCGCGCGAAGAAGATGAAGCGCCTGCCGAAAGCTCGGAGGGAGGCATC
ATCTGGACCTGTGGCCAAGTCAGGGAGGGCTGACGCTATCAGTAGGGCTT
TGGGAGTTCCTGTCAACACTTGCATGGGGAGGGGCATTCTCTTGCGAATT
CGTGCCGATGGCATG
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