mRNA_Ecto-sp13_S_contig12547.2109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.620e-55 Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 1
Query: 1 PESECDMACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
PESECDMACAGASD+ CGGYDRMSVWSY TTS TGTGFTCDGIQRGDFCCSAGCGECGG+GCSNRGEGLDGDDCCQS+I+DNGNMCSVTGKAPCMID
Sbjct: 595 PESECDMACAGASDQTCGGYDRMSVWSYGTTSVTGTGFTCDGIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.030e-41 Identity = 93/215 (43.26%), Postives = 93/215 (43.26%), Query Frame = 1
Query: 1 PESECDMACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCS----------------------------------------------------------------------------------------------------------------------AGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
PESECDMACAGASDEACGGYDRMSVWSY TTS T T FTCDGIQRGDFCCS AGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID
Sbjct: 11 PESECDMACAGASDEACGGYDRMSVWSYRTTSVTDTDFTCDGIQRGDFCCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGVFPYNERFLVGGWVCSARFGVSPNQTAPLLKTMVVLGGLWWTTSVTDTDFTCDGIQRGDFCCSVGGVFPYNERFLVGGWAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 9.220e-17 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 112 FTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*ET 300
FTCDG+ +GD+CCSAGC ECGG GCS+RG GL G DCC S+I N+CSVTG APC++D +T
Sbjct: 238 FTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDT 297
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 4.340e-16 Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 91 TSGTGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*E 297
TS + + FTCDGI G CC C CGG GCSNRG GL GDDCC SNIE++G +CSV G+APC +D E
Sbjct: 66 TSPSDSPFTCDGILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.300e-14 Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 97 GTGTGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
G T TCD G+ +G++CC+ GCG CGG GCS+R EGL GDDCC SNI NG +C+ +G APC+ D
Sbjct: 18 GVATAQTCDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGD 86
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.340e-14 Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 106 TGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*ETE 303
T TCD G+ GD+CC+ GCG CGG GCS R EGLDG+DCC +NI NG +C+ +G APC+ D E +
Sbjct: 6 TAQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCIGDVEDD 75
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 5.740e-14 Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 97 GTGTGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
G T TCD G+ G +CC+ GCG CGG GCS+R EGL+GDDCC SNI NG +C+ +G APC+ D
Sbjct: 18 GVTTAQTCDNGLAGVSTGVYCCTLGCGTCGGSGCSSRAEGLNGDDCCTSNIASNGILCADSGAAPCIGD 86
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 4.460e-13 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 100 TGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGE-GLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
T FTCDG++R +FCCS+GC +CGG CS + + GL G+DCCQ+ I +G +CSVT +APC +D
Sbjct: 7 TAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQSGLTGEDCCQNRITASGRLCSVTREAPCYMD 71
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 6.250e-13 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 100 TGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGE-GLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
T FTCDG++R +FCCS+GC +CGG CS + + GL G+DCCQ+ I +G +CSVT +APC +D
Sbjct: 774 TAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQIGLTGEDCCQNRITASGRLCSVTQEAPCYMD 838
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 3.530e-11 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 124 GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
GIQ G+ CC A CG CGG GC+ G GL D+CCQS IED G +CSVT +APC++D
Sbjct: 2698 GIQTGNACCLAECGTCGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVD 2753 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12547.2109.1 >prot_Ecto-sp13_S_contig12547.2109.1 ID=prot_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp MACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCSAGCGEback to top mRNA from alignment at Ecto-sp13_S_contig12547:375..1535+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12547.2109.1 ID=mRNA_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12547:375..1535+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12547:375..1535+ >mRNA_Ecto-sp13_S_contig12547.2109.1 ID=mRNA_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12547:375..1535+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |