mRNA_Ecto-sp13_S_contig9470.21082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9470.21082.1
Unique NamemRNA_Ecto-sp13_S_contig9470.21082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.580e-61
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            QAANMYSVRSYAIGYAVAELPYILF+SLAFCSIFYWMT LANSA QFFMYWLYFILWISL+VFTGMMLVMV      AETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE
Sbjct: 1165 QAANMYSVRSYAIGYAVAELPYILFMSLAFCSIFYWMTDLANSAHQFFMYWLYFILWISLMVFTGMMLVMV------AETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 1278          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.520e-59
Identity = 101/120 (84.17%), Postives = 110/120 (91.67%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYW+TGLA+SA +FFMYWLYF+     +VFTGMM VMVLPN QVA+TL  ALSSMFSLFAGFLI+PAK+PDPWLFA+YLNPLHYVVE
Sbjct:  518 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWITGLADSADRFFMYWLYFLXXXXXMVFTGMMFVMVLPNTQVAQTLAGALSSMFSLFAGFLISPAKIPDPWLFAFYLNPLHYVVE 637          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.780e-58
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYW+TGLA+SA QFFMYWLYF      +VFTGMM VMVLPN QVA+TL  ALSSMFSLFAGFLI+PAK+PDPWLFA+YLNPLHYVVE
Sbjct: 1253 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWITGLADSADQFFMYWLYFXXXXXXMVFTGMMFVMVLPNTQVAQTLAGALSSMFSLFAGFLISPAKIPDPWLFAFYLNPLHYVVE 1372          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.260e-42
Identity = 73/120 (60.83%), Postives = 95/120 (79.17%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            +AANMYS  +Y IGY VAE+PYI+ I+LAFC IFY++ GLA +A QFF YW+YF+LW++ +VF GMM V ++P+   A  L   L SMFS+FAGFLI+PAK+P  WL+AYYLNPLHY++E
Sbjct:  402 KAANMYSSLAYVIGYTVAEVPYIVVITLAFCCIFYFVMGLAATAHQFFFYWMYFMLWVTFMVFNGMMFVFIIPSFSTAGVLAGTLVSMFSVFAGFLISPAKIPGLWLWAYYLNPLHYILE 521          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.440e-28
Identity = 53/120 (44.17%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            QAA MY V+ Y +GY +AE+PY++F +L   SIFYWM      A +FF +WL+F L  + + F G  L  +LP+I+ A+ L S  +S+F++F GF I+P ++P+ W++AYY+ P HY +E
Sbjct: 1184 QAARMYHVQPYILGYFLAEIPYLIFNTLLCISIFYWMANFEADAAKFFWFWLFFFLNTTAMTFFGHGLTAILPSIKDAQALASVSNSLFAVFGGFFISPGQIPNYWIWAYYITPFHYAIE 1303          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.350e-25
Identity = 51/120 (42.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            QA+NMY+V+ +++G+ +AE+PY++F +L   +IFY+M  LA  A +FF       L  S + F G  + ++LP ++ A++ G  ++S F++F GFLI+PA +PD W++AYYL+PLHY +E
Sbjct: 1110 QASNMYAVQPFSLGHFLAEIPYLIFNTLLSTTIFYFMANLAPEAAKFFWXXXXXXLNTSAMTFLGHAMTVLLPTVKAAQSFGGVINSFFAVFGGFLISPALIPDYWIWAYYLSPLHYAIE 1229          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A6G0XTE1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.330e-22
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            +A+ MY+   YA  Y++ E+PY+LF SL F  +FY+M  L   +G FF ++LY++L+     + G  LV VLP+++ A      L+S+ SLFAGF I+   +PD W   Y+++PLHY +E
Sbjct: 1094 RASGMYATYPYATVYSLVEIPYVLFNSLVFSVVFYFMIDLKPDSGAFFWFYLYYMLYNLFATYLGQFLVAVLPDLRTAVVATGGLNSLISLFAGFFIHKHSIPDGWSILYWMSPLHYTLE 1213          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A6U4JUK8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JUK8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.950e-21
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            +AANMY+V +Y++   + E+PY++ ISL FC+++Y   G       FF+Y+L+  LWIS+  F G   V ++P    A   GS +  + + F GF+   A++P+  +F ++ +PLHYV E
Sbjct:   22 RAANMYTVGAYSLSIGLVEIPYLIMISLVFCTVYYLSVGFTLDPVHFFLYYLFIFLWISMTTFYGQFWVALMPTRTAAMAAGSGVIQIINFFGGFIQPVAEIPNHLIFFHWASPLHYVFE 141          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A7S1TP17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP17_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.840e-21
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 QAANMYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            +AANMY    Y +  AVAE+PYI  + + FC ++Y+  GL  +AG FF Y+LY +LW++++ F G  +V ++P    A  +G+ +  +F+LFAGF+  P  +     F ++ +P+HYV E
Sbjct: 1247 RAANMYRSEVYNMSIAVAEVPYIALVCMVFCVVYYFTVGLQATAGHFFEYYLYVLLWVAVMTFYGQFVVALMPTRVAAMAVGAGIVQLFNLFAGFIAPPQDINPQIQFFHWASPMHYVFE 1366          
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Match: A0A7S0AHY2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AHY2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.340e-20
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   13 MYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYFILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPDPWLFAYYLNPLHYVVE 360
            MY+  S    ++ AE+P+I++ SLAF  +FY+M G A+ A +FF Y L+F L ++   + G ML  +L + + A+ LGS ++ M +LF G LI P  +   WLF Y++ PLHY +E
Sbjct:  459 MYNSSSINAAFSFAEIPFIIWASLAFVVVFYFMLGFASEAAKFFTYLLFFALTLATFTYLGQMLTALLRDAETAQLLGSGVAGMSALFCGILIKPQFISSFWLFMYWITPLHYTLE 574          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9470.21082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI3.580e-6191.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7U8_9PHAE1.520e-5984.17ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LFN4_ECTSI1.780e-5885.00Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQN0_ECTSI1.260e-4260.83ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835Z0F1_9STRA9.440e-2844.17ABC-2 type transporter-domain-containing protein n... [more]
A0A835ZIR5_9STRA1.350e-2542.50ABC-2 type transporter-domain-containing protein n... [more]
A0A6G0XTE1_9STRA2.330e-2240.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6U4JUK8_9STRA2.950e-2136.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TP17_9STRA3.840e-2138.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0AHY2_9STRA2.340e-2040.52Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9470contigEcto-sp13_S_contig9470:3348..4741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score200.3
Seed ortholog evalue5e-49
Seed eggNOG ortholog2880.D8LFP2
Model size361
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
Cds size348
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464214.8403013-UTR-Ecto-sp13_S_contig9470:3347..33591681464214.8403013-UTR-Ecto-sp13_S_contig9470:3347..3359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9470 3348..3359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464214.8541236-CDS-Ecto-sp13_S_contig9470:3359..34991681464214.8541236-CDS-Ecto-sp13_S_contig9470:3359..3499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9470 3360..3499 +
1681464214.873181-CDS-Ecto-sp13_S_contig9470:4064..41221681464214.873181-CDS-Ecto-sp13_S_contig9470:4064..4122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9470 4065..4122 +
1681464214.8848352-CDS-Ecto-sp13_S_contig9470:4591..47411681464214.8848352-CDS-Ecto-sp13_S_contig9470:4591..4741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9470 4592..4741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9470.21082.1prot_Ecto-sp13_S_contig9470.21082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9470 3360..4741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9470.21082.1

>prot_Ecto-sp13_S_contig9470.21082.1 ID=prot_Ecto-sp13_S_contig9470.21082.1|Name=mRNA_Ecto-sp13_S_contig9470.21082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MYSVRSYAIGYAVAELPYILFISLAFCSIFYWMTGLANSAGQFFMYWLYF
ILWISLLVFTGMMLVMVLPNIQVAETLGSALSSMFSLFAGFLINPAKVPD
PWLFAYYLNPLHYVVE
back to top

mRNA from alignment at Ecto-sp13_S_contig9470:3348..4741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9470.21082.1 ID=mRNA_Ecto-sp13_S_contig9470.21082.1|Name=mRNA_Ecto-sp13_S_contig9470.21082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9470:3348..4741+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGCCAACATGTACAGCGTGCGTTCGTACGCCATCGGATACGCCGT AGCGGAGCTTCCGTACATCCTCTTCATCTCGCTAGCCTTCTGCTCGATCT TCTACTGGATGACGGGCCTCGCCAACTCGGCCGGCCAGTTCTTCATGTAC TGGTAAGGCGCGAGGCCACTGGCCTTCACCGCTCATCCTCTGTCGATGCC ATTCGTTGTGGAATGTGGGCAATTTCTGGGTATTTTCTATGTCCATACCC AAGTTTGGAGAGCCACGTGTGTCGATGATGAGAAACCGCGCTGTGTGCAC CACTACCCTTCAGGAATGGGCACACAGGGCAAGCATCAATCTTGCTCAAG CTCACAGGCTAGCGTAGGTTTCGTACGTAACATACCACACCCGCTGGACA TATTTCAAAGCTCGACTGTTGGGCGAGGAAGAGGAAGCCAGAATGAAACG ATACGTGATCGGAAAGCCCTTCTCGAAGCGGTTCCAACGCCGACGGTTTC GGCGTGGTCGTCTTTTTTGAGCCGGAGAGAAAGCGAGCTTGAATGATCGG CCCAGGAAGTGCGGAATCTTATGCGACATACGGCACTGCTGTCCACCTCG ACCCCCATGTTCTCACCTTCAAGGTAGCAACAACAGGTTTCCGACATTTC ACGCCCTGTTGTGTTAACGTCTCCGCGGACTCCGTTCCGCGTGCTGTGCG CTCCCTCCCCCAACCAGGCTCTACTTTATCCTGTGGATATCCCTCCTGGT CTTTACTGGCATGATGCTCGTGATGGTGAGATCTCTTACCCTCTGTGTAG AAATTGCACCAAGTGCGAACCGTGCTGTTGAAGATATCGCGTGTTATTCT GTCTTAGCCCACCTCTTATTCTAGAAGCAACGACCACGTGCTCGTATACC CGGACGATACGTACACCTCTTCCTGCAGCATGGCGGCTCTGGATCCAAGC GCGTGCTGCTTTTGTAAGCCTACGTCGCGCTCTCCGTCTCGTGAGCTGCC CTACTATTTTCGTTCCTTTCTCCCTTGGTTCAATATGCTCTACATGTCCC TCGATCTCTCTCGTCGATCCGCTGGTTCTGCAGGCCTACAGTGAGCAATC CGCTTGGACTACACCCGCTTCCTTCTCATGCCGTTTTAAGTATACCTACC GACCTACATCGAGCACGATAGTACTGCTGATGAATCTGAAATATTTCGAT TGGTGTACTTCTAAGGTTTATTGCAATGTCGTTGTCCGCCGAAGGTTCTG CCGAACATCCAGGTGGCCGAAACCTTGGGAAGCGCCCTGTCGTCCATGTT CAGCCTCTTCGCTGGCTTCCTCATCAACCCGGCCAAAGTCCCTGATCCCT GGCTGTTCGCTTACTACTTGAACCCTTTGCACTACGTTGTCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9470:3348..4741+

>mRNA_Ecto-sp13_S_contig9470.21082.1 ID=mRNA_Ecto-sp13_S_contig9470.21082.1|Name=mRNA_Ecto-sp13_S_contig9470.21082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9470:3348..4741+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAGCGTGCGTTCGTACGCCATCGGATACGCCGTAGCGGAGCTTCC
GTACATCCTCTTCATCTCGCTAGCCTTCTGCTCGATCTTCTACTGGATGA
CGGGCCTCGCCAACTCGGCCGGCCAGTTCTTCATGTACTGGCTCTACTTT
ATCCTGTGGATATCCCTCCTGGTCTTTACTGGCATGATGCTCGTGATGGT
TCTGCCGAACATCCAGGTGGCCGAAACCTTGGGAAGCGCCCTGTCGTCCA
TGTTCAGCCTCTTCGCTGGCTTCCTCATCAACCCGGCCAAAGTCCCTGAT
CCCTGGCTGTTCGCTTACTACTTGAACCCTTTGCACTACGTTGTCGAG
back to top