mRNA_Ecto-sp13_S_contig12539.2103.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Match: A0A6H5KQY7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY7_9PHAE) HSP 1 Score: 811 bits (2095), Expect = 4.370e-287 Identity = 436/500 (87.20%), Postives = 446/500 (89.20%), Query Frame = 1
Query: 1 MSLAVRDVTHCRWRRYLVRLAVSLLLALPPSWSFKPTTTVTSKPSHHRKQQXXXXHQQPRATPNRRRCAHAHSMQCTAATLAVCRSAVFDNADNFEDDVGTAAPALAATPPRRGVXXXXXXXXXXXXXXXXXXXXXXXXXDSIVVLSDWLDESQAALGLPGLPGLGNREEHLNQGLVEVIGSQPNGDDEDGVGDGSAPFRFQQLIQQVWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQVPMQADVGPASARSSNGDVAAPEVALTRSKTLLSTGSRLLADVEQSLALTRRQLGNMPAADKLPCSAAALPTDGGPKDNVGAAAPSPGKAWLGLSAAPTAXXXXXXXXTEEEKEAARERWLSGAAAEPEAVGSGTDPVDDSATKDLEKASEMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ 1500
MSL VRD HCRWRRYLVRL VSLL+ALPPSWSFK TTTVTSKP HHRKQQ HQQPRATPNRRRCAHA SMQCTA TLAVCRSAVFDNADNFEDDVGTAAP LA TPPRRGV DS+VVLSDWLDESQA LGL GLPGLGNREEHLNQGLVEV+GSQ GDDEDGVGDGSAPFRFQQLIQQ+WATLSRG+QLEYLG EGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFN DGEVSFDEFVRWYSMSTALDEKPQQ+P+QADVGPASARSSNG +AAPEVAL+RSKTLLSTGSRLLADVEQSLALT RQLGNMPAADKLP SAAA+PTDGGP DNVGAAAPSPGKAWLGLSAA XXXXXXXXTEEEKEAARERWLSGAAAEP AVGSGTDPVDDSATKDLEKA EMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ
Sbjct: 1 MSLVVRDAAHCRWRRYLVRLTVSLLVALPPSWSFKATTTVTSKPLHHRKQQHQRQHQQPRATPNRRRCAHAQSMQCTAVTLAVCRSAVFDNADNFEDDVGTAAPPLAETPPRRGVYPTEGGGSSSRGGGAGVEVPTGGVKDSVVVLSDWLDESQAPLGLAGLPGLGNREEHLNQGLVEVVGSQAGGDDEDGVGDGSAPFRFQQLIQQMWATLSRGHQLEYLGNEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNRDGEVSFDEFVRWYSMSTALDEKPQQLPVQADVGPASARSSNGGIAAPEVALSRSKTLLSTGSRLLADVEQSLALTSRQLGNMPAADKLPFSAAAIPTDGGPNDNVGAAAPSPGKAWLGLSAAXXXXXXXXXXXTEEEKEAARERWLSGAAAEPGAVGSGTDPVDDSATKDLEKALEMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ 500
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Match: D7G573_ECTSI (GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G573_ECTSI) HSP 1 Score: 681 bits (1757), Expect = 7.600e-236 Identity = 383/427 (89.70%), Postives = 390/427 (91.33%), Query Frame = 1
Query: 220 MQCTAATLAVCRSAVFDNADNFEDDVGTAAPALAATPPRRGVXXXXXXXXXXXXXXXXXXXXXXXXXDSIVVLSDWLDESQAALGLPGLPGLGNREEHLNQGLVEVIGSQPNGDDEDGVGDGSAPFRFQQLIQQVWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQVPMQADVGPASARSSNGDVAAPEVALTRSKTLLSTGSRLLADVEQSLALTRRQLGNMPAADKLPCSAAALPTDGGPKDNVGAAAPSPGKAWLGLSAAPTAXXXXXXXXTEEEKEAARERWLSGAAAEPEAVGSGTDPVDDSATKDLEKASEMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ 1500
MQCTA TLAVCRSA FD ADNFED+VGTAAP LA TPPRRGV XXXXXXXXXXX DS+VVLSDWLDESQA+LGLPGLPGLGNREEHLNQGLVEV+GSQ NGDDEDGVGDGSAPFRFQQLIQQ+WATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQ+P QA+VGPASARS NG V APEVALTRSKTLLSTGSRLL DVEQSLALT RQL NMPAADK P SAAA PTDGGP NVGAAAPSPGKAWLGLSAAP XXXXXXXXTEEEKEAARERWLSGAAAEP AVGSGTDPVDDSA KDLEKA EMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ
Sbjct: 1 MQCTAVTLAVCRSAAFDKADNFEDEVGTAAPPLAETPPRRGVSPAEXXXXXXXXXXXGVEGPTDDVEDSVVVLSDWLDESQASLGLPGLPGLGNREEHLNQGLVEVVGSQANGDDEDGVGDGSAPFRFQQLIQQMWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQANVGPASARSGNGGVTAPEVALTRSKTLLSTGSRLLVDVEQSLALTSRQLTNMPAADKSPRSAAAPPTDGGPNHNVGAAAPSPGKAWLGLSAAPXXXXXXXXXXTEEEKEAARERWLSGAAAEPGAVGSGTDPVDDSAAKDLEKALEMLRVLVRAHADVDTLVAALASCIIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ 427
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Match: A0A835YJV9_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV9_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.160e-32 Identity = 122/365 (33.42%), Postives = 166/365 (45.48%), Query Frame = 1
Query: 586 SAPFRFQQLIQQVWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQVPMQADVGPASARSSNGDVAAPEVALTRSKTLLSTGSRLL--------------------------------ADVEQSLALTRRQLGNMPAADKLPCSAAALPTDGGPKDNVGAAAPSPGKAWLGL----------SAAPTAXXXXXXXXTE----EEKEAARERWLSGAAAEPEAVGSGTDPVDD--SATKDLEKASEMLRVLVRAHADVDTLVAALASC------------IIRNPMGRYNLEVIEEQFGPIIRGIVEDRLLLERLPQ 1500
SAPFRFQ+LI +W L +G LEYLG EG+A+VK+A+ VLAA +ALREHP + GV +P++ F+EMDF+S+GEV+F+EFVRWY S ++ A + PA R + + + V Q RQ+ ++ A P +A G + GA A +AW G SA + E EKE R RWLSG T L+ + E++++LV AD DT+VAALA +I P+G YNLEVIEEQFGP++RGIVEDR+LL+ L +
Sbjct: 107 SAPFRFQRLISAMWRELRKGGALEYLGSEGQARVKRAMIVLAAMAALREHPRRDGVLSPKKIFAEMDFDSNGEVTFEEFVRWYEGSA------RRGAAAAALSPARLRGRDTGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVFQGADQLWRQVQDLEPA---PVAAGNRNDPAGSDRSAGAGA----EAWWGRGPDAGARASGSAGGSGQLVQGSSAQEGFAAREKERLRARWLSGGGEXXXXXXXXXXXXXXXXGVTDGLQHSLEVVKILVGMEADADTIVAALACSSAQRPQMAQDRGLIGGPIGPYNLEVIEEQFGPVVRGIVEDRVLLDSLAE 458
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Match: A0A7S4DFJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFJ0_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 1.220e-14 Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 421 DSIVVLSDWLDESQA-ALGLPGLPG-LGNREEHLNQGLVEVIGSQPNGDDEDGVGDGSAPFRFQQLIQQVWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQT--GVENPQQAFSEMDFNSDGEVSFDEFVRWYSMS 843
+ +VVL+DWLDE A + LP LG L +V P +F+++++ +W L+ +L+YL + +A +K+AL+V+ A+S+L EHP T NP QA+ E D N DG+++F+EF RWY S
Sbjct: 73 EQVVVLTDWLDEDDADSQELPSSSSALGFARYQDENDLADV------------------PQKFKRMVKDMWEELTSEGELDYLSEAEQALIKKALAVITAFSSLNEHPAYTYGTSRNPFQAYQEADANGDGDLTFEEFDRWYRAS 199
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Match: A0A4D9D784_9STRA (EF-hand domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D784_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 8.430e-11 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 478 PGLPGLGNREEHLNQGLVEVIGSQPNGDDEDGVGDGSAPFRFQQLIQQVWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQT-GVENPQQAFSEMDFNSDGEVSFDEFVRWYSMS 843
PG G+G+ N GL + +DG P R Q+ + VW + RG+++ YL E + +VKQ L VLA + L +HP Q ++ + F + D N DG++SF+EF+RWY+ S
Sbjct: 130 PGDSGMGHSTRPPN-GLFTTALGLSSATHDDGQAAQQLPVRLQREVNLVWYEIQRGDRMAYLRAEERERVKQQLVVLAFFRTLFDHPSQVLNTQSAEACFQQADVNRDGQLSFEEFLRWYTAS 251 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12539.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12539.2103.1 >prot_Ecto-sp13_S_contig12539.2103.1 ID=prot_Ecto-sp13_S_contig12539.2103.1|Name=mRNA_Ecto-sp13_S_contig12539.2103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=500bp MSLAVRDVTHCRWRRYLVRLAVSLLLALPPSWSFKPTTTVTSKPSHHRKQback to top mRNA from alignment at Ecto-sp13_S_contig12539:2990..5019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12539.2103.1 ID=mRNA_Ecto-sp13_S_contig12539.2103.1|Name=mRNA_Ecto-sp13_S_contig12539.2103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12539:2990..5019+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12539:2990..5019+ >mRNA_Ecto-sp13_S_contig12539.2103.1 ID=mRNA_Ecto-sp13_S_contig12539.2103.1|Name=mRNA_Ecto-sp13_S_contig12539.2103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1500bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12539:2990..5019+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |