mRNA_Ecto-sp13_S_contig9423.21021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9423.21021.1
Unique NamemRNA_Ecto-sp13_S_contig9423.21021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9423.21021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9423contigEcto-sp13_S_contig9423:1221..1980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size505
Hectar predicted targeting categoryother localisation
Exons2
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464209.8687484-CDS-Ecto-sp13_S_contig9423:1220..14631681464209.8687484-CDS-Ecto-sp13_S_contig9423:1220..1463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9423 1221..1463 -
1681464209.8793273-CDS-Ecto-sp13_S_contig9423:1719..19801681464209.8793273-CDS-Ecto-sp13_S_contig9423:1719..1980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9423 1720..1980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9423.21021.1prot_Ecto-sp13_S_contig9423.21021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9423 1221..1980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9423.21021.1

>prot_Ecto-sp13_S_contig9423.21021.1 ID=prot_Ecto-sp13_S_contig9423.21021.1|Name=mRNA_Ecto-sp13_S_contig9423.21021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
DETVPRSAVGRGGAFRKVGSHLCCVCLLHNRPLSVLQSAVQTKPTIAGVL
GVLSRAAAAAWNGPGTCALNFAISVATFLPEIDWDSSVTTGVPRQHQQVK
QEEQGVARVVDGRSKEAKSENGVEEPIARAAGHQEACIKAEAIVVGPLPL
VSTHAPMAQRAAPLVSF*
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mRNA from alignment at Ecto-sp13_S_contig9423:1221..1980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9423.21021.1 ID=mRNA_Ecto-sp13_S_contig9423.21021.1|Name=mRNA_Ecto-sp13_S_contig9423.21021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9423:1221..1980- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAACAGTGCCCCGAAGCGCCGTCGGGAGAGGAGGCGCGTTTCGCAA
AGTGGGCTCGCACTTGTGCTGTGTGTGCCTCCTCCACAACCGGCCCCTGT
CTGTTTTACAAAGCGCAGTCCAAACAAAACCTACGATAGCAGGGGTGCTC
GGCGTCCTCTCGAGGGCTGCTGCTGCTGCTTGGAACGGCCCCGGGACTTG
CGCTCTGAATTTCGCGATATCCGTGGCAACCTTTCTCCCCGAAATTGATT
GGGATTCTTCGGTAAATCCTTTTTTTGACAGAATGGGCAAAACCGTCGGT
TTTCGGTTTTCCCTACCAAGGCCGTGATCGAGGGTTGGCGTTACGAACAG
CGTTGAGCTCAGACTATGTTCTTGTTCTCGAGCCAGTCAAGGTTGGTCTA
CCGCGTACGGCGTTCCGGCCATAGATGTACCCGCCACTTTCGAGACGGTC
CGCACTGTGTTTAAAAAAAAAATGCCCCATCTGGCCACCGCCCTCCTTTG
CTTTGGTTATCTTTCAGGTGACTACGGGAGTACCAAGACAGCACCAACAA
GTCAAGCAAGAGGAACAAGGCGTCGCCCGTGTCGTGGACGGCCGCTCGAA
GGAAGCGAAATCAGAGAACGGCGTAGAAGAACCGATCGCGCGAGCAGCAG
GCCATCAAGAAGCTTGTATCAAGGCAGAAGCCATAGTGGTCGGCCCTTTG
CCGCTCGTTTCCACACACGCGCCAATGGCACAACGGGCAGCACCACTGGT
GAGTTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9423:1221..1980-

>mRNA_Ecto-sp13_S_contig9423.21021.1 ID=mRNA_Ecto-sp13_S_contig9423.21021.1|Name=mRNA_Ecto-sp13_S_contig9423.21021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9423:1221..1980- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAACAGTGCCCCGAAGCGCCGTCGGGAGAGGAGGCGCGTTTCGCAA
AGTGGGCTCGCACTTGTGCTGTGTGTGCCTCCTCCACAACCGGCCCCTGT
CTGTTTTACAAAGCGCAGTCCAAACAAAACCTACGATAGCAGGGGTGCTC
GGCGTCCTCTCGAGGGCTGCTGCTGCTGCTTGGAACGGCCCCGGGACTTG
CGCTCTGAATTTCGCGATATCCGTGGCAACCTTTCTCCCCGAAATTGATT
GGGATTCTTCGGTGACTACGGGAGTACCAAGACAGCACCAACAAGTCAAG
CAAGAGGAACAAGGCGTCGCCCGTGTCGTGGACGGCCGCTCGAAGGAAGC
GAAATCAGAGAACGGCGTAGAAGAACCGATCGCGCGAGCAGCAGGCCATC
AAGAAGCTTGTATCAAGGCAGAAGCCATAGTGGTCGGCCCTTTGCCGCTC
GTTTCCACACACGCGCCAATGGCACAACGGGCAGCACCACTGGTGAGTTT
CTGA
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