mRNA_Ecto-sp13_S_contig12539.2102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12539.2102.1
Unique NamemRNA_Ecto-sp13_S_contig12539.2102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12539.2102.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.430e-30
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 3 
Query:  213 MSYVRSTNPFADGPGSRASMKSATTSPSRASAVPSAMSTMSGYGGNDGDSDQDTETESYVNNAEPW 410
            MSYVRSTNPFA+GPGSRASMKSATTSPSRASAVPSAMSTMSGYGGNDGDSDQDTETESYVNNAEPW
Sbjct:    1 MSYVRSTNPFANGPGSRASMKSATTSPSRASAVPSAMSTMSGYGGNDGDSDQDTETESYVNNAEPW 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12539.2102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI1.430e-3098.48RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12539contigEcto-sp13_S_contig12539:430..2697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons4
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.404859-CDS-Ecto-sp13_S_contig12539:429..4711681462668.404859-CDS-Ecto-sp13_S_contig12539:429..471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12539 430..471 -
1681462668.4129207-CDS-Ecto-sp13_S_contig12539:1081..11701681462668.4129207-CDS-Ecto-sp13_S_contig12539:1081..1170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12539 1082..1170 -
1681462668.420785-CDS-Ecto-sp13_S_contig12539:2038..20911681462668.420785-CDS-Ecto-sp13_S_contig12539:2038..2091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12539 2039..2091 -
1681462668.4319024-CDS-Ecto-sp13_S_contig12539:2471..24851681462668.4319024-CDS-Ecto-sp13_S_contig12539:2471..2485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12539 2472..2485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.4440615-UTR-Ecto-sp13_S_contig12539:2485..26971681462668.4440615-UTR-Ecto-sp13_S_contig12539:2485..2697Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12539 2486..2697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12539.2102.1prot_Ecto-sp13_S_contig12539.2102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12539 430..2485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12539.2102.1

>prot_Ecto-sp13_S_contig12539.2102.1 ID=prot_Ecto-sp13_S_contig12539.2102.1|Name=mRNA_Ecto-sp13_S_contig12539.2102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MSYVRSTNPFADGPGSRASMKSATTSPSRASAVPSAMSTMSGYGGNDGDS
DQDTETESYVNNAEPW
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mRNA from alignment at Ecto-sp13_S_contig12539:430..2697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12539.2102.1 ID=mRNA_Ecto-sp13_S_contig12539.2102.1|Name=mRNA_Ecto-sp13_S_contig12539.2102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2268bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12539:430..2697- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGGAAGCGTATTCATCACTTTGCACGTTGCAGTGCCGTGCGCCAGT
TCTTGGGCACAGCCCGTGCTCACTCGCTCAAAAAAGGGCAAACGGCCGTT
TTTTCAAAGGAAAAAACAACAGAGACAGGGGGCCGAGAGAAGGAGGGTGG
CCTAGAGCAAAAGAGTTCGTTCACGGGGGTGGGTACACTGTGGCGTGTGG
TGAGCAAACCTAATGAGCTATGTCAGGTGAGCAGAGTCGTTGCCGTGGCT
GCTGGTTGCAAAGAGAGCGTTGATGGAGGCAAAATGGTTCGGCGCCCATG
CCGCCGTTCTCTCTTGACGAAGAGTGGTCCTCGTTGAATTTTGGGAAAAA
AGTGTTGCCTCTCTCTATGGGCGTGTCAAATGCCGAGGAGTTCTTCTGGC
TACATATACCTCGTGAATGCAGATGCACATGAGGCAAAACGGTGATAAAC
GGGTGGTGACTTGTGCCGAATCTACCGTCGTAGCTTGGTGTCGCGCGATA
GTGTTGAAGGCATGGACTTTGAAAAAACGCATACCTCACTTGTATCACTG
CCTCTTCCGTCGCTCCTCCTCCAAACCGGCGGGTGCTTTGCTGCGTCTGG
CAGCAGGTCAACGAATCCTTTTGCTGACGGACCAGGTTCACGAGCATCCA
TGAAATCAGGTGGGATTCACTTCTCTACAGCAGTAGCCGATCACCGTAGT
CGCAGTGGTGGGCACCACTTGGAAGGAAGACTGCTGGCAAGGGCATGTCC
GACCTGGCCGACTCCGACTTGAGTTGCGACATGCCAAACTCCGCGTGGTC
TACAACAATCCAGCAGCAATTCATTTTTTGTTTGTCCACAAACCAGTGGC
GCCCGAAGCAAAAGCAAGACACCCTTGCCAGGGAGAGCGCACCCACAAAC
TTGTCGAAATGCAACCATGTTAACCGGCCACAAGTACAAACATGCAGACA
GCGGCAGAGGGCGCGGCCGCCGCGAGTCGTTGCTTGCCTAGGGCTTCTCC
TCCTTCTCCCTCCGAACCATGTTCTTTCGTTCGACGGCGTCCCGTCCACA
CCCGTGCAAGTCACCTGACAATCCACCCGCCAGCGTCTCTTTTTTACGTG
TCCGATTCCATCATTTTTTTAAATAGCCAACCGTCGTTTTTTTCCGGTGG
GCGCACATGCGTATGCAGATGTGGTGCAAGCAGTTCAGAGCGCACATTTT
GCGCGCTACCACTGAGGGCGCCCACAAGAAATTGACACGTGTGTGTGTGA
CTAGGAGTGCATCGCCCAAATCGACTCGAGCGTGAAAACGCTATTTAGCA
CATTCCCCAATCCCGCGTTCGTTGTTGGAGACAAGAAAATATTTGAATGT
AACTTTGTCTGTGTGCAAGAGTAGTCCATCTCCCAAGCGCGCCGCGCCCG
CCATTTTCTGTCTTCCGTTTTCGAGCACACGTCCTGGGTTTCCCATGCAA
CTGCTGCTGTGTGCATGCAAACGGCGGTTTGGAAACACTCCTTTGGCCGA
TTTCCTCCTCTCCTTGCCCGCACGCAGCTACGACATCGCCCAGCCGAGCA
TCCGCTGTGCCGTCGGCAATGTCGACCATGTCAGGCTACGGGGGCAACGA
CGGTGACTCCGATCAGGTGTGCACGGCTGCAGTAGGCGCACCCAGCCTAC
ACCGACGTTGGTTGCTTGATTTTTATCCTTTCAACACGCACCGGATCCCA
TCTCCTTTGACAGCATTTACGAATTTCAACATTTTCAAGTCCGTTCGCAT
CAGCGGACATGGATAAATACCAGTGACAGCAACGGGATTTCCATCGGCGG
AAAGTCACGAGGCGACCCCTTCGATGTTCAATGTTTCATGGCGCCGCACA
AAGCTGCTGCGGAACCAAAACGCTGCTTGCAAGGTGCAACTTAAAAAGGC
ATATTGAAAAAGTCCAGGCCAGGATGTGCATTTTCAAATGGTGACATACA
TTCTAATAGCCTAGACGGGTGTCCTCAATTCTTGCTCGTTTATAATATGG
AAGAATTTATGCATACATGTATTTTATTTTGTTTTTTCTGCTCCCTGCCA
TGGAGGTCAACATAGACCATGGCCACGGCGCCGGCGGTTGACAAGTAGGA
GCAACATACAGGACATGATTTCATTCTGGCGCGAACCCATCGGGAAAGGC
GGTTCAGCAGGACGTTTAGCATGGTACGGCGGTTCGTCTAGAAATCTGGC
GATGCTTTTTACTTTTTTTCTCGCAGGACACGGAGACGGAAAGCTACGTC
AACAACGCCGAACCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12539:430..2697-

>mRNA_Ecto-sp13_S_contig12539.2102.1 ID=mRNA_Ecto-sp13_S_contig12539.2102.1|Name=mRNA_Ecto-sp13_S_contig12539.2102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12539:430..2697- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTATGTCAGGTCAACGAATCCTTTTGCTGACGGACCAGGTTCACG
AGCATCCATGAAATCAGCTACGACATCGCCCAGCCGAGCATCCGCTGTGC
CGTCGGCAATGTCGACCATGTCAGGCTACGGGGGCAACGACGGTGACTCC
GATCAGGACACGGAGACGGAAAGCTACGTCAACAACGCCGAACCTTGG
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