mRNA_Ecto-sp13_S_contig9414.21012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9414.21012.1
Unique NamemRNA_Ecto-sp13_S_contig9414.21012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9414.21012.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 1.780e-122
Identity = 231/301 (76.74%), Postives = 240/301 (79.73%), Query Frame = 1 
Query:    1 RREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARANKREEGPKGKMILTDADFLDMNLTQVGSMTARGEHVVQDLPATNTGAPSNRRREARKAGLATALHFSLPTRLLQPRTKGAKLQASPSLPTLHSLRALAGVRSLGDLKRRLTALGTAARTATATPANQEQAIATEGGGTIGGNALSSMKTRAWKRKGKATVAEPGDTASKAEGEALANGDTPVPAIGVAVRTKNDETSTALGRQDGAAPAIAPAPADSPPTKNAEPTAEHDGATAATGKRSRDDHNKPSNDRGD 903
            RREDKKRRR+EHNIRALERARWHPSTSGYLMQRLAVSASTT IA ARAN+ EEGP+GKMILTDADFLD+NLTQ                                 GLATALHFSLP RLLQPRTK A L A+P LPT  SLRALAGVRSLGDLKR LTALGTAAR ATATPANQEQA+ATEGGGTIGGNALSSMK RAWKRK KAT AEP DTASK E EAL +GDTPVPA  VAVRT+NDETSTALGR DG APA AP  ADSPPT+NAEP AEHDGATAATGKRSRDDHNKPSND GD
Sbjct:  640 RREDKKRRRREHNIRALERARWHPSTSGYLMQRLAVSASTTVIATARANELEEGPEGKMILTDADFLDINLTQ-------------------------------GRGLATALHFSLPARLLQPRTKWAGLLAAPDLPTPPSLRALAGVRSLGDLKRELTALGTAARAATATPANQEQAMATEGGGTIGGNALSSMKARAWKRKIKATAAEPADTASKDE-EALVDGDTPVPATAVAVRTQNDETSTALGRPDGVAPAAAPPLADSPPTRNAEPPAEHDGATAATGKRSRDDHNKPSNDGGD 908
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BLAST of mRNA_Ecto-sp13_S_contig9414.21012.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 2.890e-120
Identity = 225/304 (74.01%), Postives = 239/304 (78.62%), Query Frame = 1 
Query:    1 RREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARANKREEGPKGKMILTDADFLDMNLTQVGSMTARGEHVVQDLPATNTGAPSNRRREARKAGLATALHFSLPTRLLQPRTKGAKLQASPSLPTLHSLRALAGVRSLGDLKRRLTALGTAARTATATPANQEQAIATEGGGTIGGNALSSMKTRAWKRKGKATVAEPGDTASKAEGEALANGDTPVPAIGVAVRTKNDETSTALGRQDGAAPAIAPAPADSPPTKNAEPTAEHDGATAATGKRSRDDHNKPSNDRGDSGS 912
            RREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARAN+ EEGP+GKMILTDADFLDMNLTQ                                 GLAT +HF+LPT+L QPRTKGA+L A+PS          AGVRSLGDLKR LTALGTA RTATATPANQEQA+ TEGGGT+GGNALSSMKTRAWKRK KATVAE  DTASKA+G+ALA+G TPVPA    VRT+NDETSTALGRQD  A   APAPADSPPT+NAE  AEHDGATAATGKRSRDDHNKPSNDRGDSGS
Sbjct:  525 RREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARANELEEGPEGKMILTDADFLDMNLTQ-------------------------------GRGLATPVHFNLPTKLFQPRTKGARLPAAPSXXXXXXXXXXAGVRSLGDLKRELTALGTATRTATATPANQEQAMTTEGGGTVGGNALSSMKTRAWKRKEKATVAESADTASKAKGKALADGGTPVPATXXXVRTENDETSTALGRQDSVA---APAPADSPPTRNAESRAEHDGATAATGKRSRDDHNKPSNDRGDSGS 794
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9414.21012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5G6_ECTSI1.780e-12276.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDY1_9PHAE2.890e-12074.01WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9414contigEcto-sp13_S_contig9414:1..2307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size912
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-22_000530.1
Cds size912
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464209.1294692-CDS-Ecto-sp13_S_contig9414:0..5951681464209.1294692-CDS-Ecto-sp13_S_contig9414:0..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9414 1..595 -
1681464209.1395683-CDS-Ecto-sp13_S_contig9414:919..10171681464209.1395683-CDS-Ecto-sp13_S_contig9414:919..1017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9414 920..1017 -
1681464209.148748-CDS-Ecto-sp13_S_contig9414:1784..18631681464209.148748-CDS-Ecto-sp13_S_contig9414:1784..1863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9414 1785..1863 -
1681464209.1574347-CDS-Ecto-sp13_S_contig9414:2167..23071681464209.1574347-CDS-Ecto-sp13_S_contig9414:2167..2307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9414 2168..2307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9414.21012.1prot_Ecto-sp13_S_contig9414.21012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9414 1..2307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9414.21012.1

>prot_Ecto-sp13_S_contig9414.21012.1 ID=prot_Ecto-sp13_S_contig9414.21012.1|Name=mRNA_Ecto-sp13_S_contig9414.21012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
RREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARANK
REEGPKGKMILTDADFLDMNLTQVGSMTARGEHVVQDLPATNTGAPSNRR
REARKAGLATALHFSLPTRLLQPRTKGAKLQASPSLPTLHSLRALAGVRS
LGDLKRRLTALGTAARTATATPANQEQAIATEGGGTIGGNALSSMKTRAW
KRKGKATVAEPGDTASKAEGEALANGDTPVPAIGVAVRTKNDETSTALGR
QDGAAPAIAPAPADSPPTKNAEPTAEHDGATAATGKRSRDDHNKPSNDRG
DSGS
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mRNA from alignment at Ecto-sp13_S_contig9414:1..2307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9414.21012.1 ID=mRNA_Ecto-sp13_S_contig9414.21012.1|Name=mRNA_Ecto-sp13_S_contig9414.21012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9414:1..2307- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGGGAGGATAAAAAGAGGCGGCGTCAGGAGCACAACATCCGCGCGTT
GGAGCGGGCGCGGTGGCACCCTTCAACTTCGGGTTATCTGATGCAGAGAC
TCGCGGTTTCAGCATCGACAACGGCTATTGCCGCTGCGCGGTAAGCGTTG
AGTACTTGCCTGTATATGTTCCGGGGTGTACGGACGACGAAAATTAACCT
CCACAAACACTCGCCGGGACCCCCTGGCCTCTGAAGTTTCGACCACAACT
AACACGAGGGTGTCGTACTTTCCACTCGATGAAACCGCGTCGCCGGTAAT
GAGGTTGATTCGCACGTTGGAGATGAGCGTGAGTTGGGGGGGGTATGTGG
CACCCGCGGTGACAGCAAGCAGCACAAGACTAGACCTGATTTTACCCTTT
TCAACCTTCGTGATTTACTGGCGGGCTGGCGCGTCACACTTCAGAGCGAA
CAAACGGGAGGAAGGACCTAAAGGGAAGATGATACTCACGGACGCGGATT
TTCTGGACATGAATCTAACGCAGGTAAGCAGGACAAAGAAGAGACGGCAG
GCAACGGATGTGAGGTACCCGTTGCGCAACGTCTAGGTGCCAAAATAAGA
GGCCATGAACAAGGGTTTCGACAACACGATCAATGGCGTTGGTCGCGGTT
GTTTTCGAGCGACGTCGTCGGCAGGAATAAAAATATTTCCACACGTAGAA
AACATGGGTTAGGGTTTGGTCGTGTTTACTTGCGCCGAGCACTGATGAGT
ACAACCCAGAATACCAATTGCTCTGTCAACACTGCCGTACGGATGCACAC
TGAGCACGGTATGAGTGCCATGTGTCGTGGAATCGGGAAGCGATAGTTTT
GGCGTTCGATAGGACGGTAATGTTTCGCAACACTTCATCTTGTATTGGTG
GCGGCATTACACACACTCGCCTTCTTACCACCTCATGTAGTAGGCTTATC
TCCTAAACAACAGCATCACGAGCAGTTGCGACAGGTTTTGATTCACTAGA
AACTCGCGGGTAGCATCTCTACCATGACATCCCTGTGTAGCAGCTGAAAC
GACACGTACATATATCCCTGGAGACTGAGGCCTGTCAGCAATGCCTCTGT
CAGAAATATTGTGTCCTTACACCCACCCCCGTTGCCCAACGATACCCCAC
ATGATCGCCCAACAGCTACAGCACCAGAAATTCTTGCGTGATCTGTCCGG
CATCCCTTATAGCACTTTCAGCGGACAACTTGGCCGCGTGTGTGAATCCT
ATTGATCAACCAGCCACTCACGAATTTTCGCGTTCCTCAGGTTGGGAGTA
TGACCGCTCGGGGCGAACACGTTGTCCAAGATCTGCCGGCAACAAACACG
GGAGCACCATCAAATCGTAGACGCGAGGCAAGGAAAGCGTACCGATCGAA
GAGAATAATGACACGCAAGAGGTTGTGCCCGAACGTAAGATGCTGTCGGA
AGAGGAGTGGGGCATGAACTACTCCATGGGAAACGTTGCTAGTTTGGACA
TAAACCCTAACTTAGCGTCATCTGGTGATTTCGGAAGCACCTCGCAAAAA
AGGCACAACCCCACAAGGCGTACGCGTATCAACCTACAGGAAATGTTGAA
ACTTCAACACTTTTCCCACAGCACACATGTTCCGTGTGCTACAGCACTGA
AACAACCACTTTTGTCTCGCACGCTCCTGTGGCTAAACCATTTCGAGCCA
TGTTTAGGGAAGGGGCCTCGCGACCGCGCTACACTTTAGCCTGCCCACCA
GACTTCTACAGCCGCGCACGAAGGGGGCGAAGTTACAAGCCTCCCCGAGC
CTTCCGACCCTACATTCTCTTCGAGCGCTGGCCGGAGTTCGGTCGCTGGG
CGATCTCAAGCGCCGACTGACAGCGCTCGGAACAGCCGCTCGCACCGCCA
CGGCCACACCAGCGAATCAGGAGCAGGCGATTGCCACGGAAGGCGGTGGT
ACCATTGGCGGGAATGCCCTCTCGTCCATGAAGACTCGAGCATGGAAGAG
AAAGGGGAAGGCTACAGTGGCCGAACCAGGAGACACAGCCAGCAAGGCTG
AGGGAGAAGCTTTGGCAAATGGAGACACGCCGGTGCCGGCAATAGGAGTG
GCAGTGCGCACGAAAAATGACGAAACTTCGACAGCACTAGGACGGCAAGA
CGGCGCCGCCCCGGCCATCGCGCCGGCACCCGCTGACTCCCCTCCCACGA
AAAACGCCGAGCCTACCGCTGAGCACGATGGGGCGACCGCGGCCACCGGG
AAGAGATCAAGGGACGACCACAACAAACCCAGCAACGACCGCGGCGACAG
CGGCAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9414:1..2307-

>mRNA_Ecto-sp13_S_contig9414.21012.1 ID=mRNA_Ecto-sp13_S_contig9414.21012.1|Name=mRNA_Ecto-sp13_S_contig9414.21012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9414:1..2307- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGGGAGGATAAAAAGAGGCGGCGTCAGGAGCACAACATCCGCGCGTT
GGAGCGGGCGCGGTGGCACCCTTCAACTTCGGGTTATCTGATGCAGAGAC
TCGCGGTTTCAGCATCGACAACGGCTATTGCCGCTGCGCGAGCGAACAAA
CGGGAGGAAGGACCTAAAGGGAAGATGATACTCACGGACGCGGATTTTCT
GGACATGAATCTAACGCAGGTTGGGAGTATGACCGCTCGGGGCGAACACG
TTGTCCAAGATCTGCCGGCAACAAACACGGGAGCACCATCAAATCGTAGA
CGCGAGGCAAGGAAAGCGGGCCTCGCGACCGCGCTACACTTTAGCCTGCC
CACCAGACTTCTACAGCCGCGCACGAAGGGGGCGAAGTTACAAGCCTCCC
CGAGCCTTCCGACCCTACATTCTCTTCGAGCGCTGGCCGGAGTTCGGTCG
CTGGGCGATCTCAAGCGCCGACTGACAGCGCTCGGAACAGCCGCTCGCAC
CGCCACGGCCACACCAGCGAATCAGGAGCAGGCGATTGCCACGGAAGGCG
GTGGTACCATTGGCGGGAATGCCCTCTCGTCCATGAAGACTCGAGCATGG
AAGAGAAAGGGGAAGGCTACAGTGGCCGAACCAGGAGACACAGCCAGCAA
GGCTGAGGGAGAAGCTTTGGCAAATGGAGACACGCCGGTGCCGGCAATAG
GAGTGGCAGTGCGCACGAAAAATGACGAAACTTCGACAGCACTAGGACGG
CAAGACGGCGCCGCCCCGGCCATCGCGCCGGCACCCGCTGACTCCCCTCC
CACGAAAAACGCCGAGCCTACCGCTGAGCACGATGGGGCGACCGCGGCCA
CCGGGAAGAGATCAAGGGACGACCACAACAAACCCAGCAACGACCGCGGC
GACAGCGGCAGT
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