prot_Ecto-sp13_S_contig10184.210.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10184.210.1
Unique Nameprot_Ecto-sp13_S_contig10184.210.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length151
Homology
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 4.820e-68
Identity = 118/151 (78.15%), Postives = 119/151 (78.81%), Query Frame = 0
Query:    1 RKDEIARRKRLGLPLDGLIDAKKLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            RKDEIARRKRLGLPLDGLIDAKKLL                            XXXXX Y D ALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPE PGYFGCVVITFKTS+GANACAEAMHGRW
Sbjct:   51 RKDEIARRKRLGLPLDGLIDAKKLL--------------------------NGXXXXXDYHDSALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEEPGYFGCVVITFKTSDGANACAEAMHGRW 175          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.260e-56
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0
Query:   60 YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITF+TSNGANACAEAMHGRW
Sbjct:  495 YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFRTSNGANACAEAMHGRW 586          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2R3X3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3X3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.250e-18
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   60 YDDGALP---PLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            +D+  +P   PLP+EC  ++ P  VLR+VYT E++ +   F DDLEA++L EC++FG+V+ V TP  P Y G V +TF+    A  C E M GR+
Sbjct:  296 FDEDGVPRFTPLPDECRPEQCPTCVLRNVYTAEQAASTSSFLDDLEAEILRECIQFGSVVCVVTPSQPYYVGAVCVTFEDIQAAQHCGEVMDGRF 390          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A835YW78_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW78_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.020e-18
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   66 PPLPEECGADKHPVVVLRSVYTREESEADPH-FFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            P LPE+C A+++PVV+L +VYT EE   +P  F+ +LEADML EC +FGTV  V T E   Y G V ITF  S GA  CA+ MHGR+
Sbjct:  123 PALPEQCCAEQYPVVILHNVYTAEEVTENPDGFYSELEADMLGECARFGTVRCVVTLEGE-YEGSVAITFADSAGARECAKTMHGRF 208          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2FES7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FES7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.880e-16
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 0
Query:   67 PLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFK 135
            PLP EC + + P  VLR VYT E++ +DP+F   LEADMLMEC KFG V+++ +P+ P Y G V +T++
Sbjct:   35 PLPSECRSSELPTCVLRDVYTAEQALSDPNFILQLEADMLMECCKFGKVVTLVSPDLPYYEGAVCVTYE 103          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2DIS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIS4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.460e-16
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 0
Query:   61 DDGALPP---LPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVAT-PEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            ++G +P    LPEE      P+ VLR +YT E+    P F + LEA++LMEC KFG VI V + PEA  Y G V+++F+   GA  C EAM GR+
Sbjct:   10 EEGEIPQFVRLPEESQGAIRPICVLRDLYTEEQVRERPDFLEMLEAEILMECCKFGKVICVVSMPEAAYYAGAVMVSFQEVEGAQRCGEAMDGRF 104          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S3UUB0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB0_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 2.690e-12
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0
Query:   68 LPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVAT-PEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            LPEE     +PVVV   +Y +E   ADP F   LEA+ML+EC K+G V+ + T P+ P Y G V+++FKT   A AC   M GR+
Sbjct:   90 LPEELQGHLYPVVVCHHMYLKEHL-ADPAFLPGLEAEMLVECSKYGEVVRLMTAPDIPYYQGAVLVSFKTWEMACACGNTMDGRF 173          
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S0ZX65_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZX65_NOCSC)

HSP 1 Score: 56.2 bits (134), Expect = 1.700e-6
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0
Query:   79 VVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 151
            +VVLR +++ EE+E +  F+ DL  ++  EC K GTV+ V TP      G V + FK+S  A  C   M GR+
Sbjct:  117 IVVLRHMFSVEETEGEEQFYTDLAEEVREECSKIGTVMKV-TPFERHKHGIVCVKFKSSEEAEECIRVMDGRY 188          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FR18_ECTSI4.820e-6878.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1E0_9PHAE2.260e-5698.91RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2R3X3_9STRA1.250e-1844.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YW78_9STRA2.020e-1854.02RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2FES7_9STRA2.880e-1650.72Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2DIS4_9STRA7.460e-1645.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3UUB0_HETAK2.690e-1245.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0ZX65_NOCSC1.700e-639.73Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 75..151
e-value: 1.3E-14
score: 56.0
IPR034393TatSF1-likePANTHERPTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2coord: 77..151
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 94..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10184contigEcto-sp13_S_contig10184:1150..5762 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10184.210.1mRNA_Ecto-sp13_S_contig10184.210.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10184 1150..5762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10184.210.1 ID=prot_Ecto-sp13_S_contig10184.210.1|Name=mRNA_Ecto-sp13_S_contig10184.210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
RKDEIARRKRLGLPLDGLIDAKKLLAGGGGGGGGGGGGKPPPRQMPTGGG
ENGGGGGGGYDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDD
LEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGR
W
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034393TatSF1-like
IPR035979RBD_domain_sf