mRNA_Ecto-sp13_S_contig10184.210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI) HSP 1 Score: 215 bits (548), Expect = 4.820e-68 Identity = 118/151 (78.15%), Postives = 119/151 (78.81%), Query Frame = 1 Query: 1 RKDEIARRKRLGLPLDGLIDAKKLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
RKDEIARRKRLGLPLDGLIDAKKLL XXXXX Y D ALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPE PGYFGCVVITFKTS+GANACAEAMHGRW
Sbjct: 51 RKDEIARRKRLGLPLDGLIDAKKLL--------------------------NGXXXXXDYHDSALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEEPGYFGCVVITFKTSDGANACAEAMHGRW 175
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE) HSP 1 Score: 196 bits (497), Expect = 2.260e-56 Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 Query: 178 YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITF+TSNGANACAEAMHGRW
Sbjct: 495 YDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFRTSNGANACAEAMHGRW 586
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2R3X3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3X3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.250e-18 Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1 Query: 178 YDDGALP---PLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
+D+ +P PLP+EC ++ P VLR+VYT E++ + F DDLEA++L EC++FG+V+ V TP P Y G V +TF+ A C E M GR+
Sbjct: 296 FDEDGVPRFTPLPDECRPEQCPTCVLRNVYTAEQAASTSSFLDDLEAEILRECIQFGSVVCVVTPSQPYYVGAVCVTFEDIQAAQHCGEVMDGRF 390
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A835YW78_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW78_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.020e-18 Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 196 PPLPEECGADKHPVVVLRSVYTREESEADPH-FFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
P LPE+C A+++PVV+L +VYT EE +P F+ +LEADML EC +FGTV V T E Y G V ITF S GA CA+ MHGR+
Sbjct: 123 PALPEQCCAEQYPVVILHNVYTAEEVTENPDGFYSELEADMLGECARFGTVRCVVTLEGE-YEGSVAITFADSAGARECAKTMHGRF 208
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2FES7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FES7_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.880e-16 Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 199 PLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFK 405
PLP EC + + P VLR VYT E++ +DP+F LEADMLMEC KFG V+++ +P+ P Y G V +T++
Sbjct: 35 PLPSECRSSELPTCVLRDVYTAEQALSDPNFILQLEADMLMECCKFGKVVTLVSPDLPYYEGAVCVTYE 103
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S2DIS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIS4_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 7.460e-16 Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 181 DDGALPP---LPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVAT-PEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
++G +P LPEE P+ VLR +YT E+ P F + LEA++LMEC KFG VI V + PEA Y G V+++F+ GA C EAM GR+
Sbjct: 10 EEGEIPQFVRLPEESQGAIRPICVLRDLYTEEQVRERPDFLEMLEAEILMECCKFGKVICVVSMPEAAYYAGAVMVSFQEVEGAQRCGEAMDGRF 104
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S3UUB0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB0_HETAK) HSP 1 Score: 71.2 bits (173), Expect = 2.690e-12 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 202 LPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVAT-PEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
LPEE +PVVV +Y +E ADP F LEA+ML+EC K+G V+ + T P+ P Y G V+++FKT A AC M GR+
Sbjct: 90 LPEELQGHLYPVVVCHHMYLKEHL-ADPAFLPGLEAEMLVECSKYGEVVRLMTAPDIPYYQGAVLVSFKTWEMACACGNTMDGRF 173
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Match: A0A7S0ZX65_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZX65_NOCSC) HSP 1 Score: 56.2 bits (134), Expect = 1.700e-6 Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 235 VVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFKTSNGANACAEAMHGRW 453
+VVLR +++ EE+E + F+ DL ++ EC K GTV+ V TP G V + FK+S A C M GR+
Sbjct: 117 IVVLRHMFSVEETEGEEQFYTDLAEEVREECSKIGTVMKV-TPFERHKHGIVCVKFKSSEEAEECIRVMDGRY 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10184.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10184.210.1 >prot_Ecto-sp13_S_contig10184.210.1 ID=prot_Ecto-sp13_S_contig10184.210.1|Name=mRNA_Ecto-sp13_S_contig10184.210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp RKDEIARRKRLGLPLDGLIDAKKLLAGGGGGGGGGGGGKPPPRQMPTGGGback to top mRNA from alignment at Ecto-sp13_S_contig10184:1150..5762- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10184.210.1 ID=mRNA_Ecto-sp13_S_contig10184.210.1|Name=mRNA_Ecto-sp13_S_contig10184.210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4613bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10184:1150..5762- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10184:1150..5762- >mRNA_Ecto-sp13_S_contig10184.210.1 ID=mRNA_Ecto-sp13_S_contig10184.210.1|Name=mRNA_Ecto-sp13_S_contig10184.210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10184:1150..5762- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |