mRNA_Ecto-sp13_S_contig12534.2099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12534.2099.1
Unique NamemRNA_Ecto-sp13_S_contig12534.2099.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.180e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.070e-43
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            ++VEETLERIKVQPGVEGYVICDM+GQVLRRFPTMSQETAE+YA +M HLA KARGVVRD+NPK EL Y+RIRAKRHEV+VAF +E
Sbjct:    2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKE 87          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI)

HSP 1 Score: 133 bits (335), Expect = 4.620e-39
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF 258
            SEVEET+ERIKVQPGVEGYVIC+ +GQVLRRFPTM+QETAE Y+EAM  L+ +AR VVRD+NPK ELKY+R+RAKRHE++VAF
Sbjct:    1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.640e-38
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVEETLER+KVQ GVEGYVIC+ +G VLRRFP MSQE AE YA++MRHLA KARGVVRD+NP+ EL+Y+RIRAKRHEV++AF  E
Sbjct:    2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNE 87          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.710e-37
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVEETLER+KVQPGVEGYVIC+ +GQVLRRFP+M Q+ AE+YA++MR LA KARGVVRD+NP+ EL+Y+RIRA+R EV+VA+  E
Sbjct:    2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNE 87          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN)

HSP 1 Score: 128 bits (322), Expect = 7.540e-37
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVEETLER+K+Q GVEGYVIC  +GQVLRR P+M+Q  AEIYA+ M  L+ KARGVVRD+NPK EL+Y+R+RAKRHEVLVAF +E
Sbjct:    2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQE 87          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.810e-33
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF 258
            SEVEET+ERIKVQ GVEGYVIC+ +GQVLRRFPTMS E AE YA  M  L  +ARGVVRD++PK EL Y+R+RAKRHE++VA+
Sbjct:    2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAY 84          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.540e-29
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVE T+ERIK   GVEGYVIC+  GQVLRRFPTMS + A+ YA  M  L  +ARGV+RD++PK +LKY+R+R+K+HE++VAF  +
Sbjct:    8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQ 93          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.730e-28
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVA 255
            S+VEETLERIK++PGV GYVIC+ +G VLRRFP+M+ E A+ YA AM+ LA KA GVVRD+NP   L+Y+RIR KR EV+VA
Sbjct:    2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVA 83          
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.560e-28
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQE--TAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
            SEVEETLERIK + GVEGYVIC+  G VLRR+P   ++   A +YAE+MR LA KAR VVRD++P+ EL+Y+RIRAK HEV+VAF  E
Sbjct:    7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLE 94          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL6_ECTSI1.180e-53100.00Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CIL5_9STRA1.070e-4382.56Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A812SWU6_SYMMI4.620e-3977.11DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A6T7GUX9_9STRA1.640e-3875.58Dynein light chain roadblock n=1 Tax=Florenciella ... [more]
A0A6U1LT09_9STRA2.710e-3772.09Dynein light chain roadblock n=1 Tax=Fibrocapsa ja... [more]
F0Y2Y8_AURAN7.540e-3772.09Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A7S3H6W3_9STRA1.810e-3371.08Dynein light chain roadblock n=1 Tax=Spumella elon... [more]
A0A7S0SZ17_9STRA4.540e-2960.47Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S1XSI3_9STRA3.730e-2865.85Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2F8W6_9STRA4.560e-2863.64Dynein light chain roadblock n=1 Tax=Dictyocha spe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12534contigEcto-sp13_S_contig12534:530..1373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score172.9
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D7FWL6
Model size270
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0045505,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
Exons2
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Cds size270
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.279567-CDS-Ecto-sp13_S_contig12534:529..7091681462668.279567-CDS-Ecto-sp13_S_contig12534:529..709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12534 530..709 -
1681462668.2890472-CDS-Ecto-sp13_S_contig12534:1283..13731681462668.2890472-CDS-Ecto-sp13_S_contig12534:1283..1373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12534 1284..1373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12534.2099.1prot_Ecto-sp13_S_contig12534.2099.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12534 530..1373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12534.2099.1

>prot_Ecto-sp13_S_contig12534.2099.1 ID=prot_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
FLKSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAM
RHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE*
back to top

mRNA from alignment at Ecto-sp13_S_contig12534:530..1373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12534.2099.1 ID=mRNA_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:530..1373- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCTCAAGTCGGAGGTTGAGGAAACTCTGGAACGAATCAAAGTCCAGCC GGGTGTCGAAGGATATGTCATCTGCGACATGGAGGGGCAGGTGAGGCCGG CCCGAGAAGACAAAACACGCTTTGCTACTGCACCGTCGCATGCAGCGCGT CCTCGAGACGAGACAGTTTTGCTCCGATCCTTATTATCCTTTGATGGCCC TAACGTTGGACAACCAAGTTCGGTTCATTCTTTGTCGTAGGCGTCTAGCA TCTTATGCGCGAGCTCACTTCTTGTCCCGACAAGCCACAGCACTTAATTC AACCGCCTCGGGCACGGAATGTGCGTTTCCTTCCAGGCCAAGGGCCAAGC ACACACAACGCTCAATCTTTTCATGGTGCCTCGGGCAAGACTGACCTACA AAGAAAACTCAGACGTGTAAACGCTGGCGTTTACAGACGCAAAGACGCGT GCCTAGCCTGACACAGCACCTCGTAAGTTGTATACATCGACCTACTTGTT TGAGTGGCGTTCAGGTCAACCAAAAAGAAAAAAAAACTTGTTCAGCATTT GGCACTCTCATGCATCATTCGTTGCGCACATCAGGCCCTGGACGTTGCTG CTTTAGGTTCGGTACGCTGTCCGACACTTGGCCCGAATGCGAACGCCCAT CACATGCTCGTCAGGTTTTGCGTAGGTTTCCGACGATGTCCCAGGAAACG GCCGAGATCTATGCCGAGGCTATGAGACACCTGGCTCTCAAGGCGCGCGG GGTGGTGAGGGACGTCAACCCAAAGGGGGAGCTGAAGTACATGAGGATCC GGGCGAAACGACACGAGGTTTTGGTGGCTTTTGGTGAGGAGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12534:530..1373-

>mRNA_Ecto-sp13_S_contig12534.2099.1 ID=mRNA_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:530..1373- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCTCAAGTCGGAGGTTGAGGAAACTCTGGAACGAATCAAAGTCCAGCC
GGGTGTCGAAGGATATGTCATCTGCGACATGGAGGGGCAGGTTTTGCGTA
GGTTTCCGACGATGTCCCAGGAAACGGCCGAGATCTATGCCGAGGCTATG
AGACACCTGGCTCTCAAGGCGCGCGGGGTGGTGAGGGACGTCAACCCAAA
GGGGGAGCTGAAGTACATGAGGATCCGGGCGAAACGACACGAGGTTTTGG
TGGCTTTTGGTGAGGAGTAG
back to top