mRNA_Ecto-sp13_S_contig12534.2099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.180e-53 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE
Sbjct: 2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.070e-43 Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
++VEETLERIKVQPGVEGYVICDM+GQVLRRFPTMSQETAE+YA +M HLA KARGVVRD+NPK EL Y+RIRAKRHEV+VAF +E
Sbjct: 2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKE 87
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI) HSP 1 Score: 133 bits (335), Expect = 4.620e-39 Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF 258
SEVEET+ERIKVQPGVEGYVIC+ +GQVLRRFPTM+QETAE Y+EAM L+ +AR VVRD+NPK ELKY+R+RAKRHE++VAF
Sbjct: 1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.640e-38 Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVEETLER+KVQ GVEGYVIC+ +G VLRRFP MSQE AE YA++MRHLA KARGVVRD+NP+ EL+Y+RIRAKRHEV++AF E
Sbjct: 2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNE 87
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.710e-37 Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVEETLER+KVQPGVEGYVIC+ +GQVLRRFP+M Q+ AE+YA++MR LA KARGVVRD+NP+ EL+Y+RIRA+R EV+VA+ E
Sbjct: 2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNE 87
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN) HSP 1 Score: 128 bits (322), Expect = 7.540e-37 Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVEETLER+K+Q GVEGYVIC +GQVLRR P+M+Q AEIYA+ M L+ KARGVVRD+NPK EL+Y+R+RAKRHEVLVAF +E
Sbjct: 2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQE 87
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.810e-33 Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF 258
SEVEET+ERIKVQ GVEGYVIC+ +GQVLRRFPTMS E AE YA M L +ARGVVRD++PK EL Y+R+RAKRHE++VA+
Sbjct: 2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAY 84
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA) HSP 1 Score: 109 bits (272), Expect = 4.540e-29 Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVE T+ERIK GVEGYVIC+ GQVLRRFPTMS + A+ YA M L +ARGV+RD++PK +LKY+R+R+K+HE++VAF +
Sbjct: 8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQ 93
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.730e-28 Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVA 255
S+VEETLERIK++PGV GYVIC+ +G VLRRFP+M+ E A+ YA AM+ LA KA GVVRD+NP L+Y+RIR KR EV+VA
Sbjct: 2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVA 83
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA) HSP 1 Score: 106 bits (265), Expect = 4.560e-28 Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 10 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQE--TAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 267
SEVEETLERIK + GVEGYVIC+ G VLRR+P ++ A +YAE+MR LA KAR VVRD++P+ EL+Y+RIRAK HEV+VAF E
Sbjct: 7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLE 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12534.2099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12534.2099.1 >prot_Ecto-sp13_S_contig12534.2099.1 ID=prot_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp FLKSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMback to top mRNA from alignment at Ecto-sp13_S_contig12534:530..1373- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12534.2099.1 ID=mRNA_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:530..1373- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12534:530..1373- >mRNA_Ecto-sp13_S_contig12534.2099.1 ID=mRNA_Ecto-sp13_S_contig12534.2099.1|Name=mRNA_Ecto-sp13_S_contig12534.2099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:530..1373- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |