prot_Ecto-sp13_S_contig9361.20962.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9361.20962.1
Unique Nameprot_Ecto-sp13_S_contig9361.20962.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length134
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.100e-22
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 0 
Query:    1 MTNPSDILAQARRRARSVACVATAVSVAFLLATGGLAYASSHAALSGNTGPQPHRQHPAAADFQSQ 66
            MTNP  ILAQARRRARSVACVATAVS AFLL TGG+   SSHAALSGNTGPQPH Q+PAAADFQ Q
Sbjct:    1 MTNPIGILAQARRRARSVACVATAVSAAFLLVTGGIVSGSSHAALSGNTGPQPHHQYPAAADFQWQ 66
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BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.810e-6
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:    1 MTNPSDILAQARRRARSVACVATAVSVAFLLATGGL 36
            MTNP  ILAQARRRARSVACVAT +S+ FLL TGGL
Sbjct:    1 MTNPIVILAQARRRARSVACVATVISLMFLLVTGGL 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI16_ECTSI2.100e-2283.33NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNM8_9PHAE6.810e-680.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 18..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..133
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 17..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9361contigEcto-sp13_S_contig9361:5302..5761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9361.20962.1mRNA_Ecto-sp13_S_contig9361.20962.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9361 5194..5960 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9361.20962.1 ID=prot_Ecto-sp13_S_contig9361.20962.1|Name=mRNA_Ecto-sp13_S_contig9361.20962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MTNPSDILAQARRRARSVACVATAVSVAFLLATGGLAYASSHAALSGNTG
PQPHRQHPAAADFQSQQQQQSHAKRQREDQSESTTTAARPLLYAEVAAAA
AAAAAAVALQPLHRRRCCCMKRSGRSNRQGGRT*
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