mRNA_Ecto-sp13_S_contig9361.20962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9361.20962.1
Unique NamemRNA_Ecto-sp13_S_contig9361.20962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.090e-21
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:  109 MTNPSDILAQARRRARSVACVATAVSVAFLLATGGLAYASSHAALSGNTGPQPHRQHPAAADFQSQ 306
            MTNP  ILAQARRRARSVACVATAVS AFLL TGG+   SSHAALSGNTGPQPH Q+PAAADFQ Q
Sbjct:    1 MTNPIGILAQARRRARSVACVATAVSAAFLLVTGGIVSGSSHAALSGNTGPQPHHQYPAAADFQWQ 66
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BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.520e-5
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  109 MTNPSDILAQARRRARSVACVATAVSVAFLLATGGL 216
            MTNP  ILAQARRRARSVACVAT +S+ FLL TGGL
Sbjct:    1 MTNPIVILAQARRRARSVACVATVISLMFLLVTGGL 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9361.20962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI16_ECTSI4.090e-2183.33NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNM8_9PHAE4.520e-580.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9361contigEcto-sp13_S_contig9361:5194..5960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score104.0
Seed ortholog evalue5.6e-20
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
Model size709
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorychloroplast
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
Exons2
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464204.814399-UTR-Ecto-sp13_S_contig9361:5193..53011681464204.814399-UTR-Ecto-sp13_S_contig9361:5193..5301Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9361 5194..5301 +
1681464204.8496628-UTR-Ecto-sp13_S_contig9361:5761..59601681464204.8496628-UTR-Ecto-sp13_S_contig9361:5761..5960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9361 5762..5960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464204.8263097-CDS-Ecto-sp13_S_contig9361:5301..55901681464204.8263097-CDS-Ecto-sp13_S_contig9361:5301..5590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9361 5302..5590 +
1681464204.8374236-CDS-Ecto-sp13_S_contig9361:5648..57611681464204.8374236-CDS-Ecto-sp13_S_contig9361:5648..5761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9361 5649..5761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9361.20962.1prot_Ecto-sp13_S_contig9361.20962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9361 5302..5761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9361.20962.1

>prot_Ecto-sp13_S_contig9361.20962.1 ID=prot_Ecto-sp13_S_contig9361.20962.1|Name=mRNA_Ecto-sp13_S_contig9361.20962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MTNPSDILAQARRRARSVACVATAVSVAFLLATGGLAYASSHAALSGNTG
PQPHRQHPAAADFQSQQQQQSHAKRQREDQSESTTTAARPLLYAEVAAAA
AAAAAAVALQPLHRRRCCCMKRSGRSNRQGGRT*
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mRNA from alignment at Ecto-sp13_S_contig9361:5194..5960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9361.20962.1 ID=mRNA_Ecto-sp13_S_contig9361.20962.1|Name=mRNA_Ecto-sp13_S_contig9361.20962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9361:5194..5960+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTAGTATCAAACCTTTGATCGCCTCGACGCATAACACCAGCAACACAAC
CAACTGAGGCGGAGGTGGGGTAGAACAATTGAGGACCTCATCCCATGAAG
ACGAGGCCATGACGAATCCAAGTGATATCCTCGCCCAGGCGCGGCGGCGC
GCTCGGTCTGTAGCCTGCGTGGCCACTGCTGTCTCCGTCGCGTTCTTGTT
GGCTACAGGCGGGCTAGCCTATGCTTCTTCTCACGCAGCTCTTAGCGGGA
ACACCGGGCCGCAGCCGCACCGCCAGCACCCTGCTGCTGCTGACTTCCAA
TCGCAGCAGCAGCAACAGTCGCACGCAAAGCGACAGCGAGAAGACCAAAG
CGAAAGCACAACGACAGCTGCGCGGCCACTGCTGTACGCCGAAGTGGGCG
ATCCTCGACATGGGGTGCTGCTCCCGACGAACAAGGTCACTCCGCTACAC
CACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGCTTCAACCTC
TGCACAGACGACGGTGCTGCTGCATGAAGAGAAGCGGCAGAAGCAACAGG
CAGGGAGGCAGAACCTGAAAGGCAGCAGAAAGCGAAGGGCGGCGGCAGCA
CCAGCAGCAGAGGACGACGACGACGACCAGGAGGGTGAGCAGCTACCTCA
AGAACAAGACGGAACGCCGGCTCCAGAACCCACCCCTCTTCCTACCCCCG
ACCCCACCCAAGCGCCCACGCCCGATGCTACCGAAGCACCAACGCCCGAT
GCTACCCAAGCACCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9361:5194..5960+

>mRNA_Ecto-sp13_S_contig9361.20962.1 ID=mRNA_Ecto-sp13_S_contig9361.20962.1|Name=mRNA_Ecto-sp13_S_contig9361.20962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9361:5194..5960+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAATCCAAGTGATATCCTCGCCCAGGCGCGGCGGCGCGCTCGGTC
TGTAGCCTGCGTGGCCACTGCTGTCTCCGTCGCGTTCTTGTTGGCTACAG
GCGGGCTAGCCTATGCTTCTTCTCACGCAGCTCTTAGCGGGAACACCGGG
CCGCAGCCGCACCGCCAGCACCCTGCTGCTGCTGACTTCCAATCGCAGCA
GCAGCAACAGTCGCACGCAAAGCGACAGCGAGAAGACCAAAGCGAAAGCA
CAACGACAGCTGCGCGGCCACTGCTGTACGCCGAAGTGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGTAGCGCTTCAACCTCTGCACAGACGACGGTG
CTGCTGCATGAAGAGAAGCGGCAGAAGCAACAGGCAGGGAGGCAGAACCT
GA
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