prot_Ecto-sp13_S_contig12524.2095.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12524.2095.1
Unique Nameprot_Ecto-sp13_S_contig12524.2095.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length200
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 1.530e-89
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 0 
Query:    1 MMCVFSLVQVGVLKWALVAWGFFGSLLFVSFFRLVRLVNGYAIRSNTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDDNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPRER 147
            M+CVFSLVQVGVL W L+AWGFFGSLL VS FRLVRLVNGYAIRS+TARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD+NNDVPSTVGASEGEI+RNPSFVIPEPAADSVVKPKNCSICLYPFKPRER
Sbjct:   55 MICVFSLVQVGVLNWTLMAWGFFGSLLVVSLFRLVRLVNGYAIRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNDVPSTVGASEGEIKRNPSFVIPEPAADSVVKPKNCSICLYPFKPRER 201
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: A0A836CGW1_9STRA (Ubiquitin-protein ligase/ zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.050e-16
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 0 
Query:   55 IPRGALEARLQLHHPGIELG-RLRLLLVDRDFTGEDYQALLDLDDNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPREREVRGRAATKCEELKTCLHRPDGQNLCQKLREKA 180
            + R   E+R+   HP +  G RL LLL+DRDF G+DYQ LL+LD +N  P+ VGA+E EIRRNP F + E  A  + +  +CSICL+ F   E EVR         +  CLH+   + + + LR  A
Sbjct:  118 VTRTQWESRMLARHPQLANGGRLALLLMDRDFDGDDYQMLLELDADNVAPAAVGATEAEIRRNPCFTVQESDAKQLAR--SCSICLHTFCAGE-EVR---------IVPCLHQYHSECIDEWLRMNA 232
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: W7T4H0_9STRA (Zinc finger, RING-type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4H0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.230e-7
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   59 ALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD-DNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPF 142
            A+E  + L   G +  RL+L+L+DRDF+ EDY+ L  LD D  D    +GA++ E+ R P++++     D+  K   C ICL  F
Sbjct:   85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDF 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC42_9PHAE1.530e-8993.88RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CGW1_9STRA2.050e-1642.52Ubiquitin-protein ligase/ zinc ion binding protein... [more]
W7T4H0_9STRA5.230e-737.65Zinc finger, RING-type n=2 Tax=Nannochloropsis gad... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..199
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12524contigEcto-sp13_S_contig12524:1397..4967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12524.2095.1mRNA_Ecto-sp13_S_contig12524.2095.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12524 352..5023 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12524.2095.1 ID=prot_Ecto-sp13_S_contig12524.2095.1|Name=mRNA_Ecto-sp13_S_contig12524.2095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MMCVFSLVQVGVLKWALVAWGFFGSLLFVSFFRLVRLVNGYAIRSNTARR
RRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDDNN
DVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPREREVR
GRAATKCEELKTCLHRPDGQNLCQKLREKAKGIQIFGNRFSRCPCGLNM*
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