mRNA_Ecto-sp13_S_contig12524.2095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12524.2095.1
Unique NamemRNA_Ecto-sp13_S_contig12524.2095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 2.630e-96
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 3 
Query:    3 LRASLIPLRSRRFVGLLLMMCVFSLVQVGVLKWALVAWGFFGSLLFVSFFRLVRLVNGYAIRSNTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDDNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPRER 497
            LRASLIPLRSRRFVGLLLM+CVFSLVQVGVL W L+AWGFFGSLL VS FRLVRLVNGYAIRS+TARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD+NNDVPSTVGASEGEI+RNPSFVIPEPAADSVVKPKNCSICLYPFKPRER
Sbjct:   37 LRASLIPLRSRRFVGLLLMICVFSLVQVGVLNWTLMAWGFFGSLLVVSLFRLVRLVNGYAIRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNDVPSTVGASEGEIKRNPSFVIPEPAADSVVKPKNCSICLYPFKPRER 201
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: A0A836CGW1_9STRA (Ubiquitin-protein ligase/ zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-14
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 3 
Query:  219 IPRGALEARLQLHHPGIELG-RLRLLLVDRDFTGEDYQALLDLDDNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPREREVRGRAATKCEELKTCLHRPDGQNLCQKLREKA 596
            + R   E+R+   HP +  G RL LLL+DRDF G+DYQ LL+LD +N  P+ VGA+E EIRRNP F + E  A  + +  +CSICL+ F   E EVR         +  CLH+   + + + LR  A
Sbjct:  118 VTRTQWESRMLARHPQLANGGRLALLLMDRDFDGDDYQMLLELDADNVAPAAVGATEAEIRRNPCFTVQESDAKQLAR--SCSICLHTFCAGE-EVR---------IVPCLHQYHSECIDEWLRMNA 232
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BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Match: W7T4H0_9STRA (Zinc finger, RING-type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4H0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.900e-6
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  231 ALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD-DNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPF 482
            A+E  + L   G +  RL+L+L+DRDF+ EDY+ L  LD D  D    +GA++ E+ R P++++     D+  K   C ICL  F
Sbjct:   85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDF 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12524.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC42_9PHAE2.630e-9694.55RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CGW1_9STRA1.140e-1442.52Ubiquitin-protein ligase/ zinc ion binding protein... [more]
W7T4H0_9STRA4.900e-637.65Zinc finger, RING-type n=2 Tax=Nannochloropsis gad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12524contigEcto-sp13_S_contig12524:352..5023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score282.0
Seed ortholog evalue2.2e-73
Seed eggNOG ortholog2880.D8LG18
Model size1701
KEGG koko:K19041
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-21_004940.1
EC2.3.2.27
Cds size600
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12524.2095.1prot_Ecto-sp13_S_contig12524.2095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12524 1397..4967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.912196-UTR-Ecto-sp13_S_contig12524:351..13961681462667.912196-UTR-Ecto-sp13_S_contig12524:351..1396Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12524 352..1396 -
1681462668.0032926-UTR-Ecto-sp13_S_contig12524:4967..50231681462668.0032926-UTR-Ecto-sp13_S_contig12524:4967..5023Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12524 4968..5023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.9246318-CDS-Ecto-sp13_S_contig12524:1396..15551681462667.9246318-CDS-Ecto-sp13_S_contig12524:1396..1555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 1397..1555 -
1681462667.9344501-CDS-Ecto-sp13_S_contig12524:2193..23691681462667.9344501-CDS-Ecto-sp13_S_contig12524:2193..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 2194..2369 -
1681462667.9439332-CDS-Ecto-sp13_S_contig12524:3230..33781681462667.9439332-CDS-Ecto-sp13_S_contig12524:3230..3378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 3231..3378 -
1681462667.9607317-CDS-Ecto-sp13_S_contig12524:3642..36891681462667.9607317-CDS-Ecto-sp13_S_contig12524:3642..3689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 3643..3689 -
1681462667.97222-CDS-Ecto-sp13_S_contig12524:4293..43421681462667.97222-CDS-Ecto-sp13_S_contig12524:4293..4342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 4294..4342 -
1681462667.9898515-CDS-Ecto-sp13_S_contig12524:4946..49671681462667.9898515-CDS-Ecto-sp13_S_contig12524:4946..4967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12524 4947..4967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12524.2095.1

>prot_Ecto-sp13_S_contig12524.2095.1 ID=prot_Ecto-sp13_S_contig12524.2095.1|Name=mRNA_Ecto-sp13_S_contig12524.2095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MMCVFSLVQVGVLKWALVAWGFFGSLLFVSFFRLVRLVNGYAIRSNTARR
RRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDDNN
DVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPREREVR
GRAATKCEELKTCLHRPDGQNLCQKLREKAKGIQIFGNRFSRCPCGLNM*
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mRNA from alignment at Ecto-sp13_S_contig12524:352..5023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12524.2095.1 ID=mRNA_Ecto-sp13_S_contig12524.2095.1|Name=mRNA_Ecto-sp13_S_contig12524.2095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12524:352..5023- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTGCGGGCTTCCTTAATACCTCTTCGATCGCGGCGATTCGTGGGCCTT
CTGCTCATGATGTGTGTGTTTTCTCTGGTAAGTCCGGCTGTTTGTTTGGT
ATGGTATGCACACTACAACAGGAATGTGAACTTGATTGTAGAGCAGTACG
GTAGGCGACCGAGGCTACTGCTGTTGTACAGAACGAAGTACCCCCCAACA
AGAGGTGCCACAGTTTTGGTGTGGCAGCAGGGATGTAACACTGGTGCTGA
ACGCCGCCCGGCTTCAACCCTTTCCCGTGTACAGAATCTTCGGCGTCATA
CATGCTGACGCATGGTCCAAGCTGAGGATGATGGATGCGGTGTACCCTCA
CTTGAGTACACGTACTAGTTTCTCCGCCGCGAGGATGATTGCGTATTATT
AATAGTCAAGTTAACCTGTTGTGTTTTTAAATTCGCGTACAGGGGGGCTG
AGTGTAGCGCGTATCCCTCGCTGTTGTCACACCTGAGTTCGACGCTTATT
GCGGGGTGTGTGACATACGAAATGCATGACAACCTCAGCATGGCGTACCC
CTGTACTACGTTCCCCTACCCTCGTGCGAAAACCATTTGGAGAACGGACT
CTGCCCACGGCTCACCCACACTCAACCCTCGGTACTGACTCTCCCACCGG
AAAATCGTGGAACCCTTGCTACCTGTTCTAGGTGCAAGTTGGAGTCCTGA
AGTGGGCTTTGGTGGCGTGGGGATTCTTTGGTGAGATGGGTTTGGGCGGG
CGCCGCGCCTATGTTATGTTGCGACATCGGCTTTGAGCCATCACCCCAAT
GACTTCATCGGGGTTGGCACCTGTCGGAGACAGATCGCACCGAGGTGCTC
CGAAAATACGAAAAGACATGATTTAATTGCATTTCCGCACTGGGGTCGGA
GAGATGGCACCGGGGTGCGATAAAACAGGGTGAATAAACATTAAAAAAAA
ACAATCTTTTCCGGTGAAATCTCTCCGACCAATACGGTACGTACGCATAC
AGTATGACAGCAATTTGTTTTGATCCTATGCATTCTCTCTACTCGCGCTT
TCTCAGCTTCAGTACGTTGTTTTTGGCTGTGCTGCGTGCTCATCAAGCAT
CTCTCGTGCTTGCGAATGGAAAACGCCTACACATTCTTATTTCACTGCTG
TGGCTGGGTAGACCGTAGACCGTCGTCGTACTGTACTGCTGTACTGAAAC
TGTGTGCGGTCGATACTGCTGTACATCGGGCGAACGTGTTTGGACGTACG
CTGGACGTGCTGCTCGAGCTGGACCACTCTCCCGCCGTTCATCCGTGACC
CCCCTGCCTTGTCCACCCCTCTACTTCCCCGCAGGTTCTCTGCTCTTTGT
CAGCTTTTTCCGGTTGGTGCGACTCGTCAATGTGAGATTCTCGAGGCAGA
TGGTGCTGCGTGCATGCTCCGCCGCCATGCACCACTCCAGCACACGATGT
GGCGTCCAAACGCAAGCAGCAGCAGTTTTCCTAGCGAATTATTTCCTACA
CCTTCCATGAAAAGTGTTGCAAGGCACTGCGGGTGGTTTGTCTGGGAGTT
GTCCCGCAAGCCACGACATGGCTACCCCCGGCGCTTTGAACGGTATTGAC
AGCCTTTGACACAAAGCCCGTCCCCCCGCCGCGTTTTTCGTTCAGGGCTA
CGCCATCAGGAGTAACACTGCGCGTCGAAGGCGACAACGAATACCGCGCG
GAGCGTTAGAGGCAAGATTACAGCTGCACCATCCGGGTATCGAGCTTGGA
AGGCTGCGCTTGCTGCTGGTGGACCGTGACTTCACGGGGGAAGGTAAAAT
CCCAGCCGCGACAGTTGACACGCAAGCTGCCGTTGTTTTTTTTTTTTTCA
AGGGACACATCGCGAGGCAATCTTTGTTTGTTGTCTTTCCCTGACCTTTT
CGCCGAGGTCGAGCTCTTTTTTGTCAGGCACCCCTTCAATGCTGCTGCAC
CCATTGCACGTATAGCAAATACTCAACGTGTCAGAAAAATTGTTAGACAG
GACAGATCAGTTACTTTCTGTTCGGAAGAAAGATATTCGTGTCGCTGCTT
GATTTGTTCGCATTCCGTACATACAAGGATCACATTGAACGACACTGCCG
AGTTTCGGCGCAAAATGATTACCACGAGCCCATGATCAATCGGGCGTTTC
AAACACAAAACTACCGAAACTCACCCATCCCAGTGTTCCTGGATTAACAC
ATCACGGTTCACACCGGCAAGATTTTCCGCCCTAGCTCGAGTCCGTTGGG
CGAATCCTGAAATCCCAAACACTTACACACGTGCTCCAGTATGCGGCCTG
TAGAAGAGTTCTCCGTTTTTTGCCCGCACTGGGAATGTCGTTTTCCATTG
GTCGACCGCTTTGCGCGGTCGGCGCTAAATAGTAGTAAAGTAGTTCCACA
CACACAGTGCACACCTTGTCCCCGTTGTGTGATGCCACCGTCGTAACTTA
AATTCCCCCCAAATAAAACCTTGTTGTAGCCACCTTTTGGCAAAGTAGAA
AATAGCGATTGGCCATCGGTGATAGGCCCTGTGGGAACAATTCATCGCCC
TCTCAAGGACGCGTGGTCAATAGTCTAACCATAAGGCATGCAAAACACTA
GAGAACGCCCCCCCCCCCGACCCCTGTTTTGACGTTTTTCCCCCGTGCAT
CAAGACTACCAAGCGCTGCTAGACCTGGACGATAACAACGACGTGCCGTC
GACGGTCGGGGCGAGCGAGGGGGAGATCAGGCGGAACCCGTCCTTCGTGA
TTCCGGAGCCGGCGGCCGACAGCGTCGTCAAGCCCAAGAACTGCTCCATC
TGCCTCTATCCCTTCAAGCCGCGAGAGCGTGTGCGGATCATACCCTGCTT
GCACCAGTTCCACACAGAAGTGAGTCGCGCGAAAAAAAACGAGACCCTGA
TGGACTGCACTAGTAGTGAGTGGGTCATTCCTTGCTGTTCAGTTTCACGG
CATAGACGGTGACCTTCGGTAAACTCCTGCACTGATGGCAGCGCGTCTTC
TTAAGATTGCGCCACATTTCTGCTTGAGAGAATGACTCAATCACCAGTAG
TTCCTCTGGTAGTTATCGGGGCTGCATTTAATTTCGGAGATATGAGCAGG
TATAGATGGCCCTATTGCGCGCCGTCGACGGGTGGTGGACGCGGTTTTGT
CCGTCGTGCTTATCTGCGGCAGAGTGGGAAAATATTGCATGAACTCGTTG
AGAAAGAGTCTTGTTGTTTGCCATTCGCGGCACATGGCGCGCAGCGCCAA
GGCCTGTATATCCCGTATAGCCCAGCTCGGCCGCGCACTCCGTGTTTGAT
TGGCGTCTCTCGTTTCTGCCGCCTCGTCTGGGCACGTCTTCATCACGCCC
CCGCAGTGTATCGACCCGTGGCTTCGGCAGAACGCCATCTGTCCGGTGTG
CAAGTTCCCGGCGGTGGGATAGATAGGTGGCCTGCAAGGAGGGCAAAGGA
GCAGGCTTCGATGACGAGGAGGTTCGAGGGAGAGCGGCGACAAAGTGTGA
GGAGCTAAAAACATGCTTGCACCGGCCGGACGGTCAAAACCTGTGTCAGA
AGTTAAGAGAGAAAGCAAAAGGTATCCAGATCTTTGGCAACCGTTTTTCT
AGGTGTCCTTGCGGGTTGAATATGTAGTTTCTTTTGACCAACACCTTCGG
GATGGCTTAGGAATGCTGGTGTTGGAGTTCCGTTGCATGTCTATGCTTTG
GTTTTGGCGTCCCCCTTTTTTCGGGTAGTAGAGCTGCTGTATGCCGCCAA
CTCGGATAAACGTTATTTACTTTCGTAGGAGTTGTATGTGGCTTGGAGAA
TGTCTACGTTTGCCAATGATTTTGATGCCTGTTATCACGGCAGAATGTGA
GCCATGCTTGCAAGATCAACGACGGGGCAGGGGCCGGCAGCGCAGGCACC
ATTTGTACATATTTTCTGTTGCTGCCGGACCGCCATCCGTGTAGAGCTCG
GCCGGTGTTTGTGAGGGCTTTGGAGTGCTCACGCAGCGGAAATGCCCGCA
GGACTCGCGTCTGCTGGTTGCCTATGGGTGTTTAGCTGGCATCAACCGCG
CTAACTAAAATTAATTGGCCAATAAGTATGTGTCATGTTATGCGCGAAGC
CTTGCGCATGGCTACAGGCTTGCGGGTTTTTGTCTGCCGTCCGTGTGTTT
TGTCGTGTGATTCTGTGACGGTCGCTCTTGAGTGCTGTTGTTTTTCTGGT
TATTTTTTTTGTTCATCGGATGTTTCTTCTTCGATGCGACTTGTCGTACG
ATATGCAATGTTCATGTTTACCGCAGTCGTCGGCGTTTTGTTGTTTAGAT
TGGGGCGGCTAGTAAATGTCTTGTTCTTAAGTGAAAGTAATGGAAGGCCG
GTTTTTGTTTTCGTGAAGCCACCTCGTGGTTTGGGCTAAGCGAGCGCAAT
GTTTCAGATTAGAGGTGGTTGAGGGGTTTACCCCAGAGAGTCTCGCCGGC
GAGACTCCTCTTTCGCAGGATTCAGGGACAAGTCTGCTGTTTTCTTGCGG
GGCTGAAACCCTTGGACGATGCATATCAATCGTCTCCAACTCGGCGATTG
AGTGTGCCTGTGTGGTAATTTAACGGACCAGAAGGAAGCGTGACTAGGCT
ACGCAACCGGTCATAGAGAGTAAATGGTAGCAGCCAGAAGTTAAGAAGTT
CAGCCTCAAAAAAGGACAAACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12524:352..5023-

>mRNA_Ecto-sp13_S_contig12524.2095.1 ID=mRNA_Ecto-sp13_S_contig12524.2095.1|Name=mRNA_Ecto-sp13_S_contig12524.2095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12524:352..5023- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTGTGTGTTTTCTCTGGTGCAAGTTGGAGTCCTGAAGTGGGCTTT
GGTGGCGTGGGGATTCTTTGGTTCTCTGCTCTTTGTCAGCTTTTTCCGGT
TGGTGCGACTCGTCAATGGCTACGCCATCAGGAGTAACACTGCGCGTCGA
AGGCGACAACGAATACCGCGCGGAGCGTTAGAGGCAAGATTACAGCTGCA
CCATCCGGGTATCGAGCTTGGAAGGCTGCGCTTGCTGCTGGTGGACCGTG
ACTTCACGGGGGAAGACTACCAAGCGCTGCTAGACCTGGACGATAACAAC
GACGTGCCGTCGACGGTCGGGGCGAGCGAGGGGGAGATCAGGCGGAACCC
GTCCTTCGTGATTCCGGAGCCGGCGGCCGACAGCGTCGTCAAGCCCAAGA
ACTGCTCCATCTGCCTCTATCCCTTCAAGCCGCGAGAGCGTGAGGTTCGA
GGGAGAGCGGCGACAAAGTGTGAGGAGCTAAAAACATGCTTGCACCGGCC
GGACGGTCAAAACCTGTGTCAGAAGTTAAGAGAGAAAGCAAAAGGTATCC
AGATCTTTGGCAACCGTTTTTCTAGGTGTCCTTGCGGGTTGAATATGTAG
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