mRNA_Ecto-sp13_S_contig1252.2094.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1252.2094.1
Unique NamemRNA_Ecto-sp13_S_contig1252.2094.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: D7FU71_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU71_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 7.990e-83
Identity = 135/184 (73.37%), Postives = 160/184 (86.96%), Query Frame = 3 
Query:  396 MARLCVFESEEALGKFLISNYKETQRPHRPQQSPRAELHDETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKL-IKEASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLM 944
            MARLCVF+S E +GKFL++NY+E+QR + PQ SPR +LHDETETAAALLGYVYSNMQPWFKEDTD++L +SDV S+RS RY+AIHVRRGDK+ ++EASRTEVEVYLQAAASIL+NST  VDGPNSI GLWVSSDD SV+PEVK +AS YF NV+D+ VVSI+FR +  A+ GN D+LPTTSH M
Sbjct:    1 MARLCVFDSNEDVGKFLMANYEESQRINVPQPSPRTQLHDETETAAALLGYVYSNMQPWFKEDTDAMLLQSDVHSVRSVRYVAIHVRRGDKVTLQEASRTEVEVYLQAAASILQNSTGSVDGPNSIGGLWVSSDDPSVLPEVKALASTYFANVQDDRVVSITFRAEGLAQDGNKDQLPTTSHRM 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: A0A6H5JIU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIU1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.530e-43
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = 3 
Query:  396 MARLCVFESEEALGKFLISNYKETQRPHRPQQSPRAELHDETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKL-IKEASRTEVEV 704
            MARLCVF+S+E LGKFL++NY+E+QR   PQ+S R +LHDETETAAALLGYVYSNMQPWFKEDT+ +L +SDV S+RS RY+AIHVRRGDKL +KEASRTEVEV
Sbjct:    1 MARLCVFDSDEDLGKFLMANYEESQRIEVPQRSSRTQLHDETETAAALLGYVYSNMQPWFKEDTERMLLQSDVDSVRSARYVAIHVRRGDKLTLKEASRTEVEV 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.200e-38
Identity = 116/357 (32.49%), Postives = 175/357 (49.02%), Query Frame = 3 
Query:  126 YSKRWMIDMFNSGKSGRCSRLSHTYRWRNVGWGSNINRFLTVWLDSIVRDSDSYDFGLDVTPAFFGETKCP---VASDRTGKQVSGWECFFQPMARLCVFESEEALGKFLISN------YKETQR---------PHRPQQSPRAELHDETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKLI--KEASRTEVEVYLQAAASILRNSTEGVDGPNS---IVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLP-RYSSHSVDTPTWYFGRR 1124
            +S  W ++ +  G+ G C     ++ WR  G GSNIN  L  W+ ++  +  S     D+T    GE +        +  G+  +GW+C F+PM  LC F S E+  ++++S         E  R         P     S      D     AA+  Y++SN+ PW + D D + R S     +   ++ +H+RRGDK+   + AS    + YL+AA   L    EG D   S   I G+WV+SD+  V+ +VK +A  Y PNV ++ +   S   +   E G      T +   TY  +V   A+L  ++ AD+FVGT+SSN+GRL+ LLRE  GL  R S+ S+D P W  GRR
Sbjct:  106 FSSEWAVE-YARGEEG-CDLARGSFMWRGQGLGSNINNMLNAWVYALSVEKWS-----DMT-VVVGENQMKWVDCGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFL----EGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRT---ATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGRR 446
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.870e-37
Identity = 123/369 (33.33%), Postives = 178/369 (48.24%), Query Frame = 3 
Query:   96 ATQTVAQEQAYSKRWMIDMFNSGKSGRCSRLSHTYRWRNVGWGSNINRFLTVWLDSIVRDSDSYDFGLDVTPAFFGETKCPVASDRTGKQVSGWECFFQPMARLCVFES--EEALGKFLI-SNYKETQR---------PHRPQQSPRAELHDETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKLIK-EASRTEVEVYLQAAASILRNSTEGVDGPNS---IVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTT-SHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLP-RYSSHSVDTPTWYFGRREL-AMDGS 1145
            A    A    +S  W  + +  G++G C     ++ WR  G GSN+N  L  W+ ++  +  S D  + V      +  C   S   G+  +GW+C F+PM  LC F S  E  + K L  ++  E  R         P     S      D     AA+  Y++SN+ PW + D D + R S     +   ++ +H+RRGDK+ + EAS    E YL+ A   L    EG D   S   I G+WV+SD+  V+ +VK +A  Y PNV +  +    F      E G   E   T +   TY  +V   A+L  ++ AD+FVGT+SSN+GRL+ LLRE  GL  R S+ S+D P W  GRR   AM G+
Sbjct:   92 AAAATAPAVLFSSEWAAE-YARGEAG-CDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWS-DMTVVVDENQMKQVDCEEESG--GEAQAGWDCLFKPMPHLCTFPSAEEHMVSKGLPKADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFL----EGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDI----FWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRRAMRGA 446
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: D8LIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU6_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 5.030e-27
Identity = 103/366 (28.14%), Postives = 166/366 (45.36%), Query Frame = 3 
Query:  126 YSKRWMIDMFNSGKSGRCSR---LSHTYRWRNVGWGSNINRFLTVWLDSIVRDSDSYDFGLDVTPAFFGET--KCPVASDRTGKQVSGWECFFQPMARLCVFESEEALGKFLIS---NYKETQR------------PHRPQQSP--RAELH----DETETAAALLGYVYSNMQPWFKEDTDSILRESDVV--SLRSGRYIAIHVRRGD-KLIKEASRTEVEVYLQAAASILRNSTEGVDGPNS---IVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLH---AELHMMSHADVFVGTYSSNVGRLVYLLREVNGLPRYSSHSVDTPTWYFG 1118
            +S+ W    F+SG +G C        TYRWR   WG N++  +  W  +I   +   D  + V P         CP  ++   ++  GW  FF PMA LCVF S++    FL +   N     R            PH   Q P  R  L     D+ +  A +L Y+ S++QP  +    ++L E DV   S + G+Y+ + VR+ + +  K    TE     + A   + +      G  S   I G+++ S+D++ +PE K++  RYF  V+ + VV +      P+      +L ++      E  + L     EL +++ ADVFVG  S +  +LV+L+RE     R +S S+D  T + G
Sbjct:   75 FSRSW-DSYFHSGPAG-CQHEEGTPSTYRWRGTDWGKNLDGLVLAWTHAISNGNG--DIAVVVEPDGLAPEGGACPADNEHGDEEAGGWPRFFTPMAHLCVFSSQQDFHDFLATRDLNQPPDGRHLGMDEDEGGDPPHAWGQDPDIRKALEGTATDQAQAMARVLHYLLSHVQPRLQGKVQAVLHEPDVAFFSDKPGKYVGMFVRKTEGRTYKSLKMTETLDCFEKAFKYIEDLDRFSAGHISFSEITGIFLVSEDTTALPEAKSIVRRYFGKVKSDKVVQLVAADPGPSATEGEVDLRSSCGTSDGEREMALKQTLVELQLLAQADVFVGVASESFSKLVFLMRETLQFARKTSLSMDETTPFPG 436
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.340e-26
Identity = 65/168 (38.69%), Postives = 95/168 (56.55%), Query Frame = 3 
Query:  621 LRSGRYIAIHVRRGDKLIKEASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLPRYSSHSVDTPTWYFGRR 1124
            +RSG+Y+ +H+RR DK   E    + + YL  A + L + T  +   N I G+WVSSDD +V  EVK +AS +FP +    V+ ++         G  D         +YE  V L AEL M++ + VF GT+SSNVGR+V L+R+   +P  S+ SVD P W+ GR+
Sbjct:    1 MRSGKYVGLHIRRTDKA-NEVQPVKTKAYLAKAVNYLASPTNDMAATN-ITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKPVQLMRGAADR-------NSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGRQ 159
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.380e-25
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = 3 
Query:  516 ETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKLIK-EASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLRE-VNGLPRYSSHSVD 1097
            +T+  A LL   + N+ PW +ED    L   D+   R   ++ +HVRRGDK+ + EA + E + YL AAA    N          I  +WV+SDD  VV EV+ +A +YFPNV DE +V +S   +  A       + T +    Y+ +V + A+L M++   +FVGTY+SNV RLV LLRE ++G  R S  S+D
Sbjct:  101 DTQVMARLL---WKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKAS--QDKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGA-------VTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: UPI00054FC0E2 (hypothetical protein n=1 Tax=Dokdonia sp. PRO95 TaxID=1239415 RepID=UPI00054FC0E2)

HSP 1 Score: 62.0 bits (149), Expect = 7.680e-7
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3 
Query:  633 RYIAIHVRRGDKLIKEASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYV-GLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLPRYSSHS 1091
            R+  IHVRRGDKLI+EA    V+ YL+      + + +G D    +  L+V+SD+  V+ E++   S          +  IS+   EP+++G++ +      +   E  V  L  E+ ++S    FVGT+SSN+GRLV+L R  N L  YS  S
Sbjct:  172 RFSGIHVRRGDKLIREAGLFIVKCYLE------KGNEKGFD----MHDLFVASDNFQVLEELENYNSY---------IEYISYC--EPSDNGHHQKSFNNQTMSNIESQVLRLLIEIEILSLTKCFVGTFSSNIGRLVHLKR--NTLNSYSLDS 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: A0A5J4YU31_PORPP (Alpha-(1,6)-fucosyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU31_PORPP)

HSP 1 Score: 62.8 bits (151), Expect = 9.250e-7
Identity = 56/187 (29.95%), Postives = 95/187 (50.80%), Query Frame = 3 
Query:  546 YVYSN-MQPWFKEDTDSILRESDVVSLRSGRYIAIHVRRGDKLIKEASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVSSDDSSVVPEVKTMA-SRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLPRYSSHSVDT 1100
            +V+S+ +Q   +   D++L ++D   L+   Y+ +H+RRGDK  K+A    +  Y+ A                 +  ++V SDD +V+ E+K M  +R         +V  S  ++E  E   ++   + + L+  E+   L  EL ++  A  FVGT+SSNVGRLV  LR+    P+ +S S+DT
Sbjct:  256 WVFSDVLQRNVEMQLDALLVQADGSRLQG--YMGVHIRRGDKY-KDAPYVPIAQYVNAIMWAANR--------YDLRMVYVCSDDFAVINELKDMVRARTAATSLRLAIVDTSQSSREGHEQRLSNNARSQNELVGVEMTAQLLLELSLLQRASFFVGTFSSNVGRLVVALRDARA-PQ-TSISLDT 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Match: A0A7J7AKV1_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7AKV1_9COLE)

HSP 1 Score: 61.6 bits (148), Expect = 2.330e-6
Identity = 58/246 (23.58%), Postives = 105/246 (42.68%), Query Frame = 3 
Query:  372 GWECFFQPMARLCVFESEEALGKFLIS-NYKETQRPHRPQQSPRAELHDET--ETAAALLGYVYSNMQPWFKEDTDSILRESDVVSLR-----------SGRYIAIHVRRGDKLIKEASRTEVEVYLQAAASILRNSTEGVDGPNSIVG-LWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDELPTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVN 1064
            GWE  F+P++ +C    E     +  S N +    P +    PR++       E  A  L  V+ N   W+     + + +  +++L               Y+A+H+RR DK+  EA    V  Y+   A +     E +D  N+ +  +++++DD +V+ E KT    Y                 E   + N   +    +L + +    L  ++H++SH+   V T+SSN+ RL Y L ++N
Sbjct:  227 GWEGVFKPLSNVCTEVDETTAVTWPGSDNSQVIALPLQTNIYPRSKYLPLAVPEDLAYRLITVHGNPSAWWVGQILNYIWKPQIITLSHIKQNTEHIKLENPYVAVHIRRTDKVRSEAKFYSVREYM---AKVDEYYNEAIDSSNATMPRVYIATDDVNVITEAKTKYPHY-----------------EIMHNPNVPNISEPDYLHSKDNIFDLILDVHILSHSKFLVCTFSSNICRLAYELMQIN 452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1252.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FU71_ECTSI7.990e-8373.37GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JIU1_9PHAE7.530e-4375.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G435_ECTSI1.200e-3832.49Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE1.870e-3733.33GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LIU6_ECTSI5.030e-2728.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU00_ECTSI8.340e-2638.69Similar to putative alpha-6-fucosyltransferase n=1... [more]
A0A6H5LR29_9PHAE5.380e-2538.27GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
UPI00054FC0E27.680e-734.42hypothetical protein n=1 Tax=Dokdonia sp. PRO95 Ta... [more]
A0A5J4YU31_PORPP9.250e-729.95Alpha-(1,6)-fucosyltransferase n=1 Tax=Porphyridiu... [more]
A0A7J7AKV1_9COLE2.330e-623.58Uncharacterized protein n=1 Tax=Abscondita termina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1252contigEcto-sp13_S_contig1252:6806..12252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score157.1
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D7G435
Model size1615
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005310.1
EC2.4.1.68
Cds size1140
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1252.2094.1prot_Ecto-sp13_S_contig1252.2094.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1252 7258..12229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.781616-UTR-Ecto-sp13_S_contig1252:6805..72571681462667.781616-UTR-Ecto-sp13_S_contig1252:6805..7257Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1252 6806..7257 -
1681462667.8828826-UTR-Ecto-sp13_S_contig1252:12229..122521681462667.8828826-UTR-Ecto-sp13_S_contig1252:12229..12252Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1252 12230..12252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.7943-CDS-Ecto-sp13_S_contig1252:7257..74761681462667.7943-CDS-Ecto-sp13_S_contig1252:7257..7476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 7258..7476 -
1681462667.8047-CDS-Ecto-sp13_S_contig1252:9175..94181681462667.8047-CDS-Ecto-sp13_S_contig1252:9175..9418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 9176..9418 -
1681462667.8144875-CDS-Ecto-sp13_S_contig1252:9670..97461681462667.8144875-CDS-Ecto-sp13_S_contig1252:9670..9746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 9671..9746 -
1681462667.8245225-CDS-Ecto-sp13_S_contig1252:9892..99841681462667.8245225-CDS-Ecto-sp13_S_contig1252:9892..9984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 9893..9984 -
1681462667.8345492-CDS-Ecto-sp13_S_contig1252:10795..109001681462667.8345492-CDS-Ecto-sp13_S_contig1252:10795..10900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 10796..10900 -
1681462667.8514504-CDS-Ecto-sp13_S_contig1252:11094..111661681462667.8514504-CDS-Ecto-sp13_S_contig1252:11094..11166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 11095..11166 -
1681462667.8652256-CDS-Ecto-sp13_S_contig1252:11375..114941681462667.8652256-CDS-Ecto-sp13_S_contig1252:11375..11494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 11376..11494 -
1681462667.8742862-CDS-Ecto-sp13_S_contig1252:12015..122291681462667.8742862-CDS-Ecto-sp13_S_contig1252:12015..12229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1252 12016..12229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1252.2094.1

>prot_Ecto-sp13_S_contig1252.2094.1 ID=prot_Ecto-sp13_S_contig1252.2094.1|Name=mRNA_Ecto-sp13_S_contig1252.2094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MSQCKLGLSIAHWAVVAAVLFDFTATQTVAQEQAYSKRWMIDMFNSGKSG
RCSRLSHTYRWRNVGWGSNINRFLTVWLDSIVRDSDSYDFGLDVTPAFFG
ETKCPVASDRTGKQVSGWECFFQPMARLCVFESEEALGKFLISNYKETQR
PHRPQQSPRAELHDETETAAALLGYVYSNMQPWFKEDTDSILRESDVVSL
RSGRYIAIHVRRGDKLIKEASRTEVEVYLQAAASILRNSTEGVDGPNSIV
GLWVSSDDSSVVPEVKTMASRYFPNVRDECVVSISFRTKEPAEHGNNDEL
PTTSHLMTYELYVGLHAELHMMSHADVFVGTYSSNVGRLVYLLREVNGLP
RYSSHSVDTPTWYFGRRELAMDGSLATAN*
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mRNA from alignment at Ecto-sp13_S_contig1252:6806..12252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1252.2094.1 ID=mRNA_Ecto-sp13_S_contig1252.2094.1|Name=mRNA_Ecto-sp13_S_contig1252.2094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1252:6806..12252- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCGAAGGCACGAGCGAGCCATGAGTCAATGTAAACTCGGATTATCA
ATTGCCCACTGGGCTGTAGTGGCAGCCGTTCTTTTCGACTTCACCGCGAC
GCAGACGGTGGCGCAGGAGCAAGCCTATTCAAAGCGGTGGATGATTGACA
TGTTCAACTCGGGGAAGAGTGGACGCTGCAGCCGGTTATCTCATACCTAC
AGATGGAGGAATGTGGGCTGGGGAAGCAACATCAATCGTGAGTGTTGCTG
ACGAGTCCGGTGTAACATCGAACGACGAGCACATCATGCTTCGTGAATTG
TGTCGTGTCTCTTGATTGATACTCAGCTGGACGGCATTAACCTCGGCGGA
TCCGGATGCCGTTGTACCGGCAGTTCACCCCCAAGTCCAATCACTCCCCT
GATAACCGCTTTATGTCCTAGCATGCCAGCAAACCGACCGTAGAGCAGGT
ATGGAAAGATTGAGTGTTTTCTGATATCGTTCAAGCACAAACCATGCACA
GGCGGCAACAATGATGTCGTCGGTGATGGAAATGCGATTGATCGGTTGGT
GTTTGCGTGCATGACATGGCAAAGAAGCACACAATCTATTACTCTCGGGT
GCGCCCCGGCAAACTGTCTGAAAGGAATTCGTTGACGATCCCACGCTTCG
AACAAAATAGAACGGATCATCATCGTTTGAGTGCATGTTCTCAAGCAATA
CTTTCGACCACCTTTTGTTGCGGATAAAACTCGGAATATCGATGCGGCCG
GCGGAAAGGATTCTTGACGGTCTGGCTTGACAGCATTGTCCGTGACAGTG
ACAGTTATGATTTCGGGCTGGACGTAACGCCGGCCTTTTTTGGAGAAACA
AAGTGCCCTGTGGCGTCAGACAGAACGGTGAGGCGTCGCAGATATGTGAA
ACGATTTCAACGCCCACCTAGCTTGTCATTGGTGTCCTCTTACCCAGCAT
CGCCTTCTATTTTTTCCGTGCATGGACGCCGTAGGAGACCCACACTGGCA
TATTCGTCTGGCGTTTATGGCCTATTTTCAACGACACGACTGAATGGGTA
ACGGGGAGGCTAATAATGTGTTGCATGAATACGCAGGGGAAGCAAGTCTC
CGGATGGGAGTGCTTCTTTCAGCCAATGGCTCGCTTGTGCGTCTTTGAAT
CCGAGGAGGTGAGACGGGTAGCATATCAGGTATAGATGTCGCAATCAGTC
ATGTACGTCGACCCTGGATACCGTCCACGACAGGGAAGAATATGACCAAT
CGGCAAGCATACCTACACGTCGCTCCTTGCAAGTGTTCCACTTACAATTG
CCTGCCTCTAATGCCTGTCCTCGAACCTGCCTTCCTTGTCCTGATCACGC
AGGCTCTCGGCAAGTTCTTGATTTCCAACTATAAGGAGACCCAAAGGCCG
CACCGTCCACAACAATCCCCCAGAGCAGAGCTCCACGACGAAACTGAGAC
TGCTGCGGTGAGGCCCAGGCGGAGTCCTAACGGCATGGGTCGTAATTTAA
ATTGGTCTCGGCCTTCCGCGTTTATGTTGCTTGCTGTCTGATTCACACAA
ATGTGTGGTACACGGGGTCAAACTCAATCTCGTCGCCTAACATGTCCCGG
CCATGAGTGTCGCACAAACTGGCAAAGGAAAATGGAAGTGGGTGTAGACA
ACATGAGACTTACACCGTTGGAGCTTTGTGATGGGCAAAACGTAGCCAGC
GCGCTATACGTTCCGCTCCCTTCGAGAAAGTATCATGGATGTCCAACTTT
GCGGGGCGCTCGATGAAACGGCTTCGTTCGGCGAGAAATCGTTCAATATT
GCTGCTGTAGAATCATCCACGTGGCCCTGAACATTTCTTCCCGCACCCAA
CAAGGATGTTGGAAAGAGTCTCTACTCTTCGCACTTGACAGTTTCGAAAA
GTCTCGTTGCCGTGACATCTCTGCCAAGCGATGTCGTCTTGAGGTCTAAA
ATCGTTCGCATGGTTCTTGATGCCATTGAACTCCGCGGACAAGACCATCA
TGGCACTCAATTGGGGCCGGCTGTGTGACATGGATCCGTTCACGGATACT
CACGGAACCGCTTGATCAAGCTATGGAAGCTACTGCGGTGATTTACTCGG
AAAAGGCTTGCAAACACCTCGGAATGGTCCACGGCGATTCCGTGGGGATC
GACAAGATGTGTTGCGATAAAAATCCATTCCATTCGTCTATGTTTCGCCT
TCGCATTCGACGTCAAATACCTCGTTCGATCTGTTTGGGCAATTTCGGTG
TTTCACGCTCGAAAACAGGCGCTACTTGGCTATGTGTATTCGAACATGCA
GCCTTGGTTCAAGGAGGACACGGATTCGATTCTTCGAGAAAGCGACGTGG
TTTCTCTCAGGTGCGGAAAACAGTCGCGCGTTAGTTTACCTACTCAACAT
TGCTTGGTCGGGGTCGTCTCAAGATTTTACCCCTCTTCTTGTGATGCGCA
AGTTGAACTGTGCAATTGGATCACTCGTGCCTGATGATATTGTCGTGGTG
CGTCAGGTCCGGGAGGTACATAGCTATCCACGTTCGGAGGGGCGACAAGC
TTATCAAGGAGGCGTCGAGGACAGAGGTGGAGGTAAAGGTCCACTCTACG
TACATAGTAGTGTTGCGGTTGAACAATACAAACGTGGCCGTTAGTGAACC
GCGATACTTGCTTGCTTGTGTCGAAATCTACTTTTTTTTCAGTCAAGACA
CTCTTAGCCAAAGCCACCGTGTTTTACACGAAGCCCATCTGTTCTCGATA
TCTCGCTATATATGTACGTGAGTACAAGCCAAAACCTGAAATATTCCATA
CTGAAATGGTGAAAGTCGCGTTTACACCCGATAGGTGTACCTTCAAGCTG
CGGCGTCTATACTTCGAAATTCAACCGAAGGTGTGGATGGCCCAAACTCC
ATCGTCGGCTTGTGGGTATCCTCCGACGACTCCAGCGTCGTACCGGAAGT
TAAGACGATGGCTTCTAGGTACTTTCCCAACGTTCGAGACGAGTGTGTGG
TCTCAATATCATTCAGAACGAAAGAACCTGCTGAGCACGGGAACAACGAC
GAACTGCCGACAACTTCCCATCTCATGGTGCGTACTGCTGCAACATATGT
GAGGCGTTTGGTGTACTTTTAGCGACCAATTGTTGCCGCGAATATCACGA
TAGTATCGTTTGTTAGGAAAATACCACTGGTCACTGTTCACTCGCCATCA
CTCCATATAGCAAGCAAGATTTTATGATATCTCGACGATATAAGTTTCAA
TCGCGTACGATCGTTGAGGCTAGTGTGGCCAACGACGAAGGGGAAACTCG
GCCTCCCTCCTGAACGTGAGTATCACTGTTTTTCAAGGGGCCTGACACCG
CTCTTTATGGGAACACAACGGTGCAAACAGAGTCTAAATTTCGAATTTTC
TCGCAGCAAGCGTTTCATAGTTTGTGGTATTGACAAAAAACGCGCCATCT
GGAGCAACGTTCGCCAAGATACGCCGCGAGGCTTCCGCTAGCCCACATCA
ACCACCTACCCGGTAACCCTCTTAGTACTGGAAGCCCAAATGGGAACACT
TTGGGACACAGCACTCAAAGGCCTATTCACCGCACTGTCATCACCTTAGG
CTTCGCTGTGTGCAATTACGTAAGAACCCTTGGTCTGTCATGCTTGGGTT
AGGTGGTACGTTGTGTGATATGCTGTGAGATGCCTCTCTTGGGCCTCTGA
CTTGCTGTACACATCGACATGGCTTCAGCCTGAAAAGTGGCCACCATTTG
TCTGACAAGAAGCTCAGATTCCTTGGAAGGACTGTAGCCCCTCGACCAAT
GGCCGACAAATATTTACTCTGCATTTTGTTCTTCTTACGGAGGGACTGGG
TACTAGGAGAGTTAACACACACCGAGCATTCCAGCTTCGATTAGAAGGCA
CCGTGTTCACCAATATCTCGACGAATGCTAAACGTGTTGCCTCGTGGATG
GTTTCTCGGAGGAGATGATGCTATGGGCTGTTTGGCAATGCCAAGGTTAG
GCGAGATGAAGCGTCGAATGCGCCGGGAAAAGCCGTTTGTATTGACGTAC
GACCGTCAACGGCCGCGAGCTGTTTGTTCAAAGTCTCGTCATTTCGACCG
CAACGGGTTTGGTTTCCACCGCAAATTTTCCGAAGAGGGAAGCAACGGCA
AAAGCAAGTCCCACCCGGCGGGAGGTAGGTCTCTGCCCCATCCTTCATGC
CCAAGGTTAGGTGCTGTGGGGTGTCGTGCGCGTTGGGAAAGTGTTCAGTT
TGTCATAATAAATTCCTAGGCCAGAGAGCGGTTGGTTCAAGTTGGGGGGG
ATTGTGCGCTCATGGTATACTTTTCCGGCGATACACTTTCGAAGAGGATG
CAACAGCCGCAGCAATGCCCCTCCTAGGGAAACAGCTCTACCCAGCATAT
TTCTTGTACCAGGTTAGATGGTTTGGGGTGTCGTGAGAGAGATGATAACA
TTTTCAACTACCCGCACGCTGCGGCCGGTTTCTTGCCGGCGTGGTATGAA
CGTGTGCCTACTTCTCGCCGTTGTGAAAAAAAAGAGATCACAGCTCTGCA
TTCCACCAGTCCCGTGGAAAAAGTCCGTTCGCCATATAGTGAGCGTGCAG
TAAAAGTGTCATTGACAAACGCTTTCGACCAAAAAAAGTAAAAACCTTGA
AGCAAATTATTTCTCAACTTTGTGATTCCGTACATCGCGGTGGAAGAACG
CTACCGTCGGCACACACTCGATGCAGAGGAGGAAACTAACACACACCCGT
CGCCGACCCCTTCCCGCCGTACTCAGACATACGAGCTGTATGTTGGACTG
CATGCAGAGCTGCACATGATGTCTCACGCGGACGTCTTCGTCGGAACGTA
CTCGTCCAACGTTGGCCGGTTGGTATATCTTTTGCGGGAGGTCAACGGGC
TCCCCCGGTACTCGAGTCATAGCGTCGATACGCCAACATGGTACTTTGGA
CGACGCGAGTTAGCCATGGATGGTAGCCTCGCAACAGCCAATTGAGGAAC
GAATATAAGTGGGAAACCAGACGGTGTGCGCATTAGCTGTGCGGACCCGG
GTGCAGAGGTGATTTTCTTCCGCGTGCCTAACGAGGCAGGCAAATGTCGA
TGCGTTCAAGTCCCCAAAATGGCCGATCTCTCTGGGGAACGATGGAGATC
AGACTACCACCATACTTAGGAAACCGCAGTCTGTCGCCGGTGCCCGTGAT
CACGTTCCTCGTTGTGAATTACGGTAGTTGTTGAAAGCGGTAAAGCTTGA
GCGAGCAGGTTGTAGGTCATCATCGTCAGATTCGTTTCAGGCCGTCTCAC
TGTGCCATGGTATTCAGAGGTAGCCGATTGTTTGATGCCCCGTGGTTTGT
TGACGTTTTTCAGCCGTACATTTATTATAATAGTGTGCCATTCTGGCTAG
TGTGCGGATGAGTCTGGATTGTGTTCAATTTGGCTGCGTTGTGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1252:6806..12252-

>mRNA_Ecto-sp13_S_contig1252.2094.1 ID=mRNA_Ecto-sp13_S_contig1252.2094.1|Name=mRNA_Ecto-sp13_S_contig1252.2094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1252:6806..12252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTCAATGTAAACTCGGATTATCAATTGCCCACTGGGCTGTAGTGGC
AGCCGTTCTTTTCGACTTCACCGCGACGCAGACGGTGGCGCAGGAGCAAG
CCTATTCAAAGCGGTGGATGATTGACATGTTCAACTCGGGGAAGAGTGGA
CGCTGCAGCCGGTTATCTCATACCTACAGATGGAGGAATGTGGGCTGGGG
AAGCAACATCAATCGATTCTTGACGGTCTGGCTTGACAGCATTGTCCGTG
ACAGTGACAGTTATGATTTCGGGCTGGACGTAACGCCGGCCTTTTTTGGA
GAAACAAAGTGCCCTGTGGCGTCAGACAGAACGGGGAAGCAAGTCTCCGG
ATGGGAGTGCTTCTTTCAGCCAATGGCTCGCTTGTGCGTCTTTGAATCCG
AGGAGGCTCTCGGCAAGTTCTTGATTTCCAACTATAAGGAGACCCAAAGG
CCGCACCGTCCACAACAATCCCCCAGAGCAGAGCTCCACGACGAAACTGA
GACTGCTGCGGCGCTACTTGGCTATGTGTATTCGAACATGCAGCCTTGGT
TCAAGGAGGACACGGATTCGATTCTTCGAGAAAGCGACGTGGTTTCTCTC
AGGTCCGGGAGGTACATAGCTATCCACGTTCGGAGGGGCGACAAGCTTAT
CAAGGAGGCGTCGAGGACAGAGGTGGAGGTGTACCTTCAAGCTGCGGCGT
CTATACTTCGAAATTCAACCGAAGGTGTGGATGGCCCAAACTCCATCGTC
GGCTTGTGGGTATCCTCCGACGACTCCAGCGTCGTACCGGAAGTTAAGAC
GATGGCTTCTAGGTACTTTCCCAACGTTCGAGACGAGTGTGTGGTCTCAA
TATCATTCAGAACGAAAGAACCTGCTGAGCACGGGAACAACGACGAACTG
CCGACAACTTCCCATCTCATGACATACGAGCTGTATGTTGGACTGCATGC
AGAGCTGCACATGATGTCTCACGCGGACGTCTTCGTCGGAACGTACTCGT
CCAACGTTGGCCGGTTGGTATATCTTTTGCGGGAGGTCAACGGGCTCCCC
CGGTACTCGAGTCATAGCGTCGATACGCCAACATGGTACTTTGGACGACG
CGAGTTAGCCATGGATGGTAGCCTCGCAACAGCCAATTGA
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