mRNA_Ecto-sp13_S_contig12518.2093.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE) HSP 1 Score: 194 bits (494), Expect = 8.840e-55 Identity = 127/133 (95.49%), Postives = 128/133 (96.24%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSM-DQAELLEAAGLXXXXXXXXXXXXXXXXXEQ-ARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQA 393
MDPDVFAQLPPDMQQEVVREHRSTVGSM DQAELLEAA XXXXXXXXXXXXXXXX EQ ARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPP+LVAEAMVMRERIPHQA
Sbjct: 516 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPDLVAEAMVMRERIPHQA 648
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI) HSP 1 Score: 162 bits (411), Expect = 5.470e-43 Identity = 91/110 (82.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query: 85 DQAELLEAAGLXXXXXXXXXXXXXXXXXEQ-ARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAEFQAAQ 411
DQAELLEAAGL EQ ARNRRMREAPGNAGGP DPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAEFQAAQ
Sbjct: 603 DQAELLEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNAGGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAEFQAAQ 712
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A7S2Y5L7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5L7_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.040e-21 Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAE 396
+DP+ F LP +MQ +VVREH S + A L+ + LXXXXXXXXXXXXXXXXXEQ R R RE A PADPS A++MDNASF+ATLPPELR EVL +ADD L++LPPNL+AEA V+RER Q +
Sbjct: 408 VDPEAFRALPREMQLDVVREHSQ---SSELAAELDGSTLXXXXXXXXXXXXXXXXXEQERRERSRETEEAA--PADPSLAADMDNASFIATLPPELRAEVLATADDETLNSLPPNLIAEANVLRERAAEQRQ 534
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A7S4HZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HZ14_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.270e-21 Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVG-----SMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER 378
MD +VF LPPDMQ+EV+ EH ST G + +L + L XX EQ R R + PADPS A EMDNASFVA+L P+LR E+LL+ADDA L +LPP++ +EA ++RER
Sbjct: 193 MDLEVFNSLPPDMQREVIAEHESTTGGGGSTAASDVQLDSTSALDPEALAALPEEMRXXVIEQERRERRAREEERSEPPADPSNAEEMDNASFVASLAPDLREEILLTADDAFLGSLPPDMQSEAQILRER 323
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: I2CQM8_NANGC (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM8_NANGC) HSP 1 Score: 92.0 bits (227), Expect = 2.370e-20 Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTV----GSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER--IPHQAEFQA 405
MDP+ FA LP ++Q+E+ +EH + GS E L A E+AR RR REA A PA+P+ A+EMDNASF+A+LPP+LR EVLL D +L++LPPN+VAEA V+RER + HQ QA
Sbjct: 1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSAL---------PEALRNEVLAEEARERRQREATA-ARAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQA 131
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 5.970e-19 Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER 378
MD + F LPPDMQQEVV +H+ T A+L +GL Q +RR RE A PADPS A+EMDNASF+ +L PELR E+LL+AD+ L++LPPN+ AEA ++RER
Sbjct: 1770 MDAEAFNSLPPDMQQEVVSQHQITEELT--AQLDPTSGLDPSVLAELPEDMRRDAIAQ--DRREREEAARAAQPADPSNAAEMDNASFLVSLAPELREEILLTADENFLNSLPPNIRAEAQLLRER 1891
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A835YKJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKJ8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 4.240e-18 Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGG-PADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQ 390
MD +VFA LP +MQQE++ S+ QA+ AAG XXXXXXXXXXXXXXXE A RR R A A PADPS A EMDNASFVA+L P+LR E+LL AD+ LSTL PNLVAEA V++ER P +
Sbjct: 1 MDAEVFASLPREMQQEILSP--SSAAPPAQAQ---AAGWDPXXXXXXXXXXXXXXXE-AEARRQRLAASAADDIPADPSHAQEMDNASFVASLAPDLRAEILLQADEQFLSTLSPNLVAEARVLQERAPRR 125
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: W7TP10_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP10_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.820e-18 Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTV----GSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER--IPHQAEFQA 405
MDP+ FA LP ++Q+E+ +EH + GS E L A E+AR RR REA PA+P+ A+EMDNASF+A+LPP+LR EVLL D +L++LPPN+VAEA V+RER + HQ QA
Sbjct: 1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSAL---------PEALRNEVLAEEARERRRREATATRA-PANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQA 131
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: K3X2T4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2T4_GLOUD) HSP 1 Score: 89.7 bits (221), Expect = 1.690e-17 Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHR-----STVGSMDQAEL-----LEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREA-PGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAEFQAAQ 411
+DP+VFA LPPDMQ E+V + +T G+ +E L+ A A RR REA A PAD SRA EMDNASFVA+L PELR E+L++ DDA L TLP + AEAM++RER + ++ Q
Sbjct: 734 IDPEVFASLPPDMQAEIVAQSAPPSVSTTAGNQGGSESFSQLDLDMANSSFDRETLEALPEDIRAEVLANERREREALAAAAAAPADISRAQEMDNASFVASLAPELREEILVTCDDAFLQTLPSQVRAEAMILRERAAFRTTYRERQ 881
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.760e-17 Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMDQAELLEAAGLXXXXXXXXXXXXXXXXXEQARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER 378
MD +VF LP +MQQEV+ +H++T+ Q + ++ XXXXXXXXXXXXXXXXX + RRMRE PADP+ A EMDNASFVA+L P+LR E+LL+ADD L++LPP+++AEA ++RER
Sbjct: 1598 MDLEVFNSLPLEMQQEVIEQHQATMNVATQLDST-SSXXXXXXXXXXXXXXXXXXXXXXQERRMREQT-----PADPANAEEMDNASFVASLAPDLREEILLAADDTFLNSLPPDIIAEAQILRER 1717 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12518.2093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12518.2093.1 >prot_Ecto-sp13_S_contig12518.2093.1 ID=prot_Ecto-sp13_S_contig12518.2093.1|Name=mRNA_Ecto-sp13_S_contig12518.2093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp MDPDVFAQLPPDMQQEVVREHRSTVGSMDQAELLEAAGLDPEALAALPADback to top mRNA from alignment at Ecto-sp13_S_contig12518:2014..3636+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12518.2093.1 ID=mRNA_Ecto-sp13_S_contig12518.2093.1|Name=mRNA_Ecto-sp13_S_contig12518.2093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12518:2014..3636+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12518:2014..3636+ >mRNA_Ecto-sp13_S_contig12518.2093.1 ID=mRNA_Ecto-sp13_S_contig12518.2093.1|Name=mRNA_Ecto-sp13_S_contig12518.2093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12518:2014..3636+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |