mRNA_Ecto-sp13_S_contig93306.20930.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93306.20930.1
Unique NamemRNA_Ecto-sp13_S_contig93306.20930.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Match: A0A6H5JK30_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK30_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.360e-9
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -1 
Query:  100 MKSNTLTTREPRCLQWAWTRREARLDRNFQNRHAHL 207
            MKS  LTTRE RCLQ AWTRREARLD+NFQNRH++L
Sbjct:    1 MKSTLLTTREKRCLQRAWTRREARLDKNFQNRHSNL 36
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BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.340e-6
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = -1 
Query:  100 SERSIGRLNRVQELQFKRQRKEGSSLSRGEWMKSNTLTTREPRCLQWAWTRREARLDRNFQNRHAHL 300
            S  S+G+LN V+E  FKRQR  GS  +R  +   +TL+ RE R +   W++RE +L R+F  R ++L
Sbjct:  122 SRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYL 188
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BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.460e-6
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = -1 
Query:  100 SERSIGRLNRVQELQFKRQRKEGSSLSRGEWMKSNTLTTREPRCLQWAWTRREARLDRNFQNRHAHL 300
            S  S+G+LN V+E  FKRQR  GS  +R  +   +TL+ RE R +   W++RE +L R+F  R ++L
Sbjct:  112 SRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYL 178
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BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Match: A0A6H5JMU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU9_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.580e-5
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = -1 
Query:  100 SERSIGRLNRVQELQFKRQRKEGSSLSRGEWMKSNTLTTREPRCLQWAWTRREARLDRNFQNRHAHL 300
            S+  +G+LN V+E  FKRQR  GS  +R  +   +TL+ RE R +   W++RE +L R+F  R ++L
Sbjct:  103 SQIGLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYL 169
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BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Match: A0A6H5J8X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X2_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.200e-5
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = -1 
Query:  100 IGRLNRVQELQFKRQRKEGSSLSRGEWMKSNTLTTREPRCLQWAWTRREARLDRNFQNRHAHL 288
            +G+LN V+E  FKRQR  GS  +R  +   +TL+ RE R +   W++RE +L R+F  R ++L
Sbjct:    4 LGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYL 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93306.20930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JK30_9PHAE4.360e-980.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUI4_9PHAE8.340e-641.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE8.460e-641.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMU9_9PHAE3.580e-540.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8X2_9PHAE4.200e-541.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93306contigEcto-sp13_S_contig93306:49..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464202.1521564-CDS-Ecto-sp13_S_contig93306:48..3481681464202.1521564-CDS-Ecto-sp13_S_contig93306:48..348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93306 49..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93306.20930.1prot_Ecto-sp13_S_contig93306.20930.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93306 49..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93306.20930.1

>prot_Ecto-sp13_S_contig93306.20930.1 ID=prot_Ecto-sp13_S_contig93306.20930.1|Name=mRNA_Ecto-sp13_S_contig93306.20930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
HVSLLPSPYRPSRFINVIRRTSVRVRWLGRLRVQVRVTVLEISVQPCLPP
RPRPLETPRLSRRQSIGLHPFPTRQAAPFLALPFELQLLHSVQPADAPL*
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mRNA from alignment at Ecto-sp13_S_contig93306:49..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93306.20930.1 ID=mRNA_Ecto-sp13_S_contig93306.20930.1|Name=mRNA_Ecto-sp13_S_contig93306.20930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93306:49..348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTTAGCCTACTCCCATCGCCCTATCGACCGTCTCGTTTCATCAACGT
GATCCGGAGAACGTCAGTCAGGGTGAGATGGTTGGGTCGGCTGCGGGTAC
AAGTGCGCGTGACGGTTTTGGAAATTTCTGTCCAGCCTTGCCTCCCGCCT
CGTCCACGCCCATTGGAGACACCGCGGCTCTCGCGTCGTCAGAGTATTGG
ACTTCATCCATTCCCCACGCGACAGGCTGCTCCCTTCCTTGCGTTGCCTT
TTGAACTGCAGCTCCTGCACTCTGTTCAACCTGCCGATGCTCCTCTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93306:49..348+

>mRNA_Ecto-sp13_S_contig93306.20930.1 ID=mRNA_Ecto-sp13_S_contig93306.20930.1|Name=mRNA_Ecto-sp13_S_contig93306.20930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93306:49..348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTTAGCCTACTCCCATCGCCCTATCGACCGTCTCGTTTCATCAACGT
GATCCGGAGAACGTCAGTCAGGGTGAGATGGTTGGGTCGGCTGCGGGTAC
AAGTGCGCGTGACGGTTTTGGAAATTTCTGTCCAGCCTTGCCTCCCGCCT
CGTCCACGCCCATTGGAGACACCGCGGCTCTCGCGTCGTCAGAGTATTGG
ACTTCATCCATTCCCCACGCGACAGGCTGCTCCCTTCCTTGCGTTGCCTT
TTGAACTGCAGCTCCTGCACTCTGTTCAACCTGCCGATGCTCCTCTCTGA
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