mRNA_Ecto-sp13_S_contig9330.20929.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9330.20929.1
Unique NamemRNA_Ecto-sp13_S_contig9330.20929.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9330.20929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9330contigEcto-sp13_S_contig9330:2785..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size605
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464202.1017554-UTR-Ecto-sp13_S_contig9330:2784..29961681464202.1017554-UTR-Ecto-sp13_S_contig9330:2784..2996Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9330 2785..2996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464202.1137855-CDS-Ecto-sp13_S_contig9330:2996..33891681464202.1137855-CDS-Ecto-sp13_S_contig9330:2996..3389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9330 2997..3389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9330.20929.1prot_Ecto-sp13_S_contig9330.20929.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9330 2997..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9330.20929.1

>prot_Ecto-sp13_S_contig9330.20929.1 ID=prot_Ecto-sp13_S_contig9330.20929.1|Name=mRNA_Ecto-sp13_S_contig9330.20929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MSWLTRGSHSSFTTTRIPLYIQLPPPCLSPPFEASEAGSKFNPTFSNVEV
PDSQDSWVSDCPNAKRSDVCSSTDTELGKLVAAFACVAVVFPLEAAYPEA
LQNDPAPLTAPKAKWSGVEFVSSTCEVEGR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9330:2785..3389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9330.20929.1 ID=mRNA_Ecto-sp13_S_contig9330.20929.1|Name=mRNA_Ecto-sp13_S_contig9330.20929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9330:2785..3389+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGACTCGCCTCCCCCCCGCAAGCAGGAGATCTCTTGGCGCACGTTTTG
TCTCTGATGCACTGGATGATGATGTTGGCAAACTTGATTGTCAGCCCCAC
CGAGCCTGAGTCAGATGCTTACCCTCTTCTCTGCACTCGCTACGGCAGAG
GCACACCCGACAACCGCATACGATGTCTCTTGGTCTTCGTTCAGCCTTGA
CGTTAACTCCTCATGTCTTGGCTCACCCGGGGTTCACACAGTTCGTTCAC
TACCACCCGTATCCCTCTGTACATTCAACTCCCCCCCCCCTGCCTCTCGC
CTCCGTTCGAAGCTAGCGAGGCAGGCTCGAAGTTCAACCCTACGTTTAGC
AACGTCGAGGTTCCCGATAGCCAGGACTCTTGGGTCAGTGACTGCCCGAA
CGCCAAGCGTAGCGACGTCTGCTCCTCCACCGACACTGAGCTAGGAAAGC
TTGTCGCCGCTTTCGCCTGTGTGGCAGTTGTCTTCCCATTGGAAGCAGCG
TACCCCGAAGCGTTACAGAACGACCCGGCTCCCCTAACGGCACCCAAAGC
GAAGTGGTCGGGCGTCGAATTCGTTTCTTCGACATGCGAGGTTGAAGGGC
GGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9330:2785..3389+

>mRNA_Ecto-sp13_S_contig9330.20929.1 ID=mRNA_Ecto-sp13_S_contig9330.20929.1|Name=mRNA_Ecto-sp13_S_contig9330.20929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9330:2785..3389+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTGGCTCACCCGGGGTTCACACAGTTCGTTCACTACCACCCGTAT
CCCTCTGTACATTCAACTCCCCCCCCCCTGCCTCTCGCCTCCGTTCGAAG
CTAGCGAGGCAGGCTCGAAGTTCAACCCTACGTTTAGCAACGTCGAGGTT
CCCGATAGCCAGGACTCTTGGGTCAGTGACTGCCCGAACGCCAAGCGTAG
CGACGTCTGCTCCTCCACCGACACTGAGCTAGGAAAGCTTGTCGCCGCTT
TCGCCTGTGTGGCAGTTGTCTTCCCATTGGAAGCAGCGTACCCCGAAGCG
TTACAGAACGACCCGGCTCCCCTAACGGCACCCAAAGCGAAGTGGTCGGG
CGTCGAATTCGTTTCTTCGACATGCGAGGTTGAAGGGCGGTAG
back to top