mRNA_Ecto-sp13_S_contig93287.20926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93287.20926.1
Unique NamemRNA_Ecto-sp13_S_contig93287.20926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.360e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 141
            KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK
Sbjct:  455 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 501
[Close]
BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.210e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 141
            KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSK+
Sbjct:  534 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKE 580
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1I2_ECTSI6.360e-20100.00PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6H5L0Y9_9PHAE2.210e-1997.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93287contigEcto-sp13_S_contig93287:290..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score91.7
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7G1I2
Preferred nameTTC6
Model size177
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K12869
KEGG ReactionR00429
KEGG Pathwayko00230,ko03040,map00230,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
EC2.7.6.5
Cds size177
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.92068-CDS-Ecto-sp13_S_contig93287:289..4661681464201.92068-CDS-Ecto-sp13_S_contig93287:289..466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93287 290..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93287.20926.1prot_Ecto-sp13_S_contig93287.20926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93287 290..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93287.20926.1

>prot_Ecto-sp13_S_contig93287.20926.1 ID=prot_Ecto-sp13_S_contig93287.20926.1|Name=mRNA_Ecto-sp13_S_contig93287.20926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKVRG
IVFWVVVQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig93287:290..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93287.20926.1 ID=mRNA_Ecto-sp13_S_contig93287.20926.1|Name=mRNA_Ecto-sp13_S_contig93287.20926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93287:290..466- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTGGGGCGGTACGAGGAGGCGATCGAGTGCTACCGGCGGAGCATCGC
GCTCAGCCCTGCCGCCCCCGCCTATGTGGCCTGGGCGCTGGTAGTGGCTA
AGCTGGCTGAGCGGGCCGAGAGAAATGCCTCGAGCAAGAAGGTGCGGGGA
ATTGTGTTTTGGGTGGTAGTCCAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93287:290..466-

>mRNA_Ecto-sp13_S_contig93287.20926.1 ID=mRNA_Ecto-sp13_S_contig93287.20926.1|Name=mRNA_Ecto-sp13_S_contig93287.20926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93287:290..466- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTGGGGCGGTACGAGGAGGCGATCGAGTGCTACCGGCGGAGCATCGC
GCTCAGCCCTGCCGCCCCCGCCTATGTGGCCTGGGCGCTGGTAGTGGCTA
AGCTGGCTGAGCGGGCCGAGAGAAATGCCTCGAGCAAGAAGGTGCGGGGA
ATTGTGTTTTGGGTGGTAGTCCAATAG
back to top