mRNA_Ecto-sp13_S_contig9328.20925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9328.20925.1
Unique NamemRNA_Ecto-sp13_S_contig9328.20925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9328.20925.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.340e-28
Identity = 143/166 (86.14%), Postives = 145/166 (87.35%), Query Frame = 2 
Query:  290 MLDARQGRRRSPRRASHEGSENECEGSRDIVRLSTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VTPSKVKPPTAPGVSRFGFKPPPAATTTAAGSLSPRGRPAAATGASERSSGSSGSR 772
            MLD+RQGRRRSPRRASHEGSENECEGS  +VRLSTGSA  XXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     VTPSKVKPPTAPGVSRFGFKPPPAATTTAAGSLSPRGRPAA  GASE SSGSSGSR
Sbjct:    1 MLDSRQGRRRSPRRASHEGSENECEGSSGVVRLSTGSATGXXXXXXXXXXXXXXXXXXXXXXAVRSPLTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVTPSKVKPPTAPGVSRFGFKPPPAATTTAAGSLSPRGRPAATIGASEPSSGSSGSR 166
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BLAST of mRNA_Ecto-sp13_S_contig9328.20925.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.440e-20
Identity = 140/154 (90.91%), Postives = 141/154 (91.56%), Query Frame = 2 
Query:  290 MLDARQGRRRSPRRASHEGSENECEGSRDIVRLSTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPSKVKPPTAPGVSRFGFKPPPAATTTAAGSLSPRGRPAAATGASERS 751
            MLDARQGRRRSPRRASHEGSENECEGS  +VRLSTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VTPSKVKPPTAPGVSRFGFKP        AGSLSPRGRP AAT ASERS
Sbjct:    1 MLDARQGRRRSPRRASHEGSENECEGSSVVVRLSTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VTPSKVKPPTAPGVSRFGFKPXXXXXXXXAGSLSPRGRPTAATAASERS 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9328.20925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJH6_9PHAE5.340e-2886.14Kinesin motor domain-containing protein (Fragment)... [more]
D7FUV4_ECTSI2.440e-2090.91Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9328contigEcto-sp13_S_contig9328:3374..4151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.4
Seed ortholog evalue5.2e-20
Seed eggNOG ortholog2880.D7FUV4
Model size779
KEGG koko:K07936,ko:K10406
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Cds size489
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.8744233-UTR-Ecto-sp13_S_contig9328:3373..36621681464201.8744233-UTR-Ecto-sp13_S_contig9328:3373..3662Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9328 3374..3662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.8882005-CDS-Ecto-sp13_S_contig9328:3662..41511681464201.8882005-CDS-Ecto-sp13_S_contig9328:3662..4151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9328 3663..4151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9328.20925.1prot_Ecto-sp13_S_contig9328.20925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9328 3663..4151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9328.20925.1

>prot_Ecto-sp13_S_contig9328.20925.1 ID=prot_Ecto-sp13_S_contig9328.20925.1|Name=mRNA_Ecto-sp13_S_contig9328.20925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MLDARQGRRRSPRRASHEGSENECEGSRDIVRLSTGSAAGGGGGPGTPAA
KLQQQSSTVETAAARSPLTPADNGGAPPSAAPATAAAAAPTAAVVAPEQQ
QSSAAVTPSKVKPPTAPGVSRFGFKPPPAATTTAAGSLSPRGRPAAATGA
SERSSGSSGSRGS
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mRNA from alignment at Ecto-sp13_S_contig9328:3374..4151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9328.20925.1 ID=mRNA_Ecto-sp13_S_contig9328.20925.1|Name=mRNA_Ecto-sp13_S_contig9328.20925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9328:3374..4151+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCACCCGGCGAGCAAGCGCGAAGCAGGTAGCCACGAGAGGTTGATCC
TCGGGGATACGCACACACTAGGTTTCGGAGTGTTTTGTTCCTCAGGAGAG
AGTAGCGGATCTCCTGTTGAACCGAGTTTCGTTGACTTGGTCCCGATTTC
CTGTTTTAGCGAGAGGAGGAATACCCGTTAGCGCGAGGAAAAGCAGGATA
TACCAACAGCAGCGGGAGGAGTGCGTGCCCAAGAGAGCTCCCGTCAAGGG
GGAAGCCTGGGCTGCTTTGAAAGACCCCTTTCTCTTGCGATGTTAGATGC
AAGGCAGGGAAGAAGGCGGAGCCCTCGCCGCGCCTCTCACGAGGGCAGCG
AGAACGAATGCGAGGGCAGCAGAGACATAGTGCGCCTTTCCACAGGCTCC
GCAGCCGGCGGCGGCGGCGGACCCGGCACTCCCGCCGCAAAGCTGCAGCA
GCAGTCCTCCACCGTCGAGACAGCAGCAGCACGCTCCCCCCTCACCCCCG
CCGACAACGGCGGCGCTCCACCATCAGCAGCACCCGCCACCGCCGCCGCC
GCCGCCCCCACGGCGGCCGTGGTGGCACCGGAACAGCAGCAGTCCTCCGC
GGCCGTGACCCCTTCCAAGGTCAAGCCGCCCACCGCCCCCGGCGTGAGCC
GCTTCGGATTCAAGCCCCCCCCGGCGGCTACGACGACAGCAGCCGGATCG
CTGTCGCCGAGAGGAAGGCCCGCCGCCGCCACCGGTGCCTCCGAGCGCAG
CAGCGGCAGCAGCGGGAGCAGAGGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9328:3374..4151+

>mRNA_Ecto-sp13_S_contig9328.20925.1 ID=mRNA_Ecto-sp13_S_contig9328.20925.1|Name=mRNA_Ecto-sp13_S_contig9328.20925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9328:3374..4151+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTAGATGCAAGGCAGGGAAGAAGGCGGAGCCCTCGCCGCGCCTCTCA
CGAGGGCAGCGAGAACGAATGCGAGGGCAGCAGAGACATAGTGCGCCTTT
CCACAGGCTCCGCAGCCGGCGGCGGCGGCGGACCCGGCACTCCCGCCGCA
AAGCTGCAGCAGCAGTCCTCCACCGTCGAGACAGCAGCAGCACGCTCCCC
CCTCACCCCCGCCGACAACGGCGGCGCTCCACCATCAGCAGCACCCGCCA
CCGCCGCCGCCGCCGCCCCCACGGCGGCCGTGGTGGCACCGGAACAGCAG
CAGTCCTCCGCGGCCGTGACCCCTTCCAAGGTCAAGCCGCCCACCGCCCC
CGGCGTGAGCCGCTTCGGATTCAAGCCCCCCCCGGCGGCTACGACGACAG
CAGCCGGATCGCTGTCGCCGAGAGGAAGGCCCGCCGCCGCCACCGGTGCC
TCCGAGCGCAGCAGCGGCAGCAGCGGGAGCAGAGGCAGC
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