mRNA_Ecto-sp13_S_contig9322.20919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9322.20919.1
Unique NamemRNA_Ecto-sp13_S_contig9322.20919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 1.570e-76
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            YRSKALSMFQRVDGVEVCLFSMYVQE+GADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK
Sbjct: 1442 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 1559          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.700e-59
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            Y SKAL MFQ +DG EVCLFSMYVQE GADAP FNARR Y++YLDSVEYFRPR  RT VYHEIL AYLDW RRRGF+ AHIWSCPPQRGNNFIFW HP HQKTPTR+RL  WY  ML+
Sbjct:  474 YASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFIFWAHPEHQKTPTRERLMTWYRLMLR 591          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A7S2C9K0_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.720e-51
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            Y SKA+ MFQ   G+++C+FSMYVQE+G+ AP  N    YISYLDSVEYFRPR  RTAVYHEILV+Y  W+R+RGF  AH+W+CPPQRGNNFIFWCHP HQ+TP++DRL  WY  ML
Sbjct:  716 YGSKAILMFQNCGGIDICIFSMYVQEYGSSAPVSNHGHVYISYLDSVEYFRPRTARTAVYHEILVSYFGWVRKRGFHTAHLWACPPQRGNNFIFWCHPQHQRTPSKDRLLAWYRAML 832          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: F0YM02_AURAN (Histone acetyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM02_AURAN)

HSP 1 Score: 179 bits (455), Expect = 4.480e-51
Identity = 79/118 (66.95%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            + S+++ +FQ+ DGV++C+FSMYV EFG DA   +A+R Y++YLDSVEYFRPR  RT VYHE+LVAYLDW RRRGF AAHIW+CPPQRGNNFIFWCHP HQ+TP+R+RL+ WY  M++
Sbjct:   63 FESRSVVLFQKNDGVDLCVFSMYVHEFG-DACGPSAKRVYVAYLDSVEYFRPRTARTEVYHELLVAYLDWSRRRGFTAAHIWACPPQRGNNFIFWCHPTHQRTPSRERLTEWYRAMVR 179          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A8J2T1L7_9STRA (Histone acetyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.280e-47
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            Y S+A+ +FQ++DG +V +FSMYV EF   A   +A R Y++YLDSVEYFRPR  RT VYHE+LVAYLDW R RGF AAHIW+CPPQRGNNFIFWCHP HQ+TP+R+RL+ WY  M+
Sbjct:  443 YESRAVVLFQKLDGCDVMVFSMYVHEFPTAAGGPSAGRVYVAYLDSVEYFRPRTARTEVYHELLVAYLDWSRGRGFDAAHIWACPPQRGNNFIFWCHPQHQRTPSRERLTEWYRAMV 559          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A482SXR0_9ARCH (Histone acetyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXR0_9ARCH)

HSP 1 Score: 166 bits (419), Expect = 2.590e-46
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            +R K + +FQ +DGV+VCLF +YVQEF    P  N    YI+YLDSV+Y RP   RT VY EI+V YL W + RGFK  H+WSCPPQRG+NFIFWCHP HQ+TP+RDRL+ WY ++ 
Sbjct:  231 FRQKCIQLFQTIDGVDVCLFCLYVQEFDVHCPLPNRNSVYIAYLDSVDYMRPSSVRTVVYQEIVVGYLKWAQARGFKQCHLWSCPPQRGDNFIFWCHPSHQRTPSRDRLNSWYNSIF 347          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A7R9U6P2_9STRA (Histone acetyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6P2_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.430e-45
Identity = 79/126 (62.70%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    7 SKALSMFQRVDGVEVCLFSMYVQEFG-AD---------APYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            SK L  FQR++GV+VC FS+YVQE+G AD         A + + RR YI+YLDSVEYFRPR  RT VYHEIL AYL W R RGF+ AHIW+CPPQRGNNFIFWCHP HQ+TPT++RL+ WY  + +
Sbjct:  459 SKNLLAFQRINGVDVCQFSLYVQEYGVADGAAGXXXXAAAHPSERRVYIAYLDSVEYFRPRAARTEVYHEILSAYLFWARLRGFQRAHIWACPPQRGNNFIFWCHPAHQRTPTKERLTEWYRKLFR 584          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: S5RK37_ARTPA (Histone acetyltransferase (Fragment) n=1 Tax=Artemia parthenogenetica TaxID=6663 RepID=S5RK37_ARTPA)

HSP 1 Score: 154 bits (389), Expect = 1.460e-45
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            YR+KAL  FQ +DGV+VC F M+VQE+G+D+P  N RR Y++YLDSV +FRP+  RTAVYHEIL+ YLD++++ G+  AHIW+CPP  G+++IF CHP  QK P   RL  WY  ML
Sbjct:   23 YRAKALFAFQDIDGVDVCFFGMHVQEYGSDSPMPNTRRVYLAYLDSVHFFRPKPLRTAVYHEILLGYLDYVKQLGYTMAHIWACPPSEGDDYIFHCHPPEQKIPKPKRLQEWYKKML 139          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A2L0B3Z3_9COLE (Histone acetyltransferase (Fragment) n=1 Tax=Anacaena pui TaxID=2055702 RepID=A0A2L0B3Z3_9COLE)

HSP 1 Score: 156 bits (394), Expect = 1.670e-45
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            YR+KAL  F+ +DG +VC F M+VQE+G+D P  N RR YI+YLDSV +F+PR+ RTAVYHEIL+ Y+D++++ G+  AHIW+CPP  G+++IF CHPL QK P   RL  WY  ML
Sbjct:  114 YRAKALFAFEEIDGTDVCFFGMHVQEYGSDCPAPNTRRVYIAYLDSVHFFKPRQFRTAVYHEILLGYMDYVKQLGYTMAHIWACPPSEGDDYIFHCHPLEQKIPKPKRLQDWYKKML 230          
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Match: A0A7S1U9I3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9I3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.450e-45
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEFGADAPYFNA------RRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWY 339
            Y SK + +FQR++G++VC FS+YVQE+G    Y +A      RR YI+YLDSVEYFRPR  RTAVY E+L +YL W R RGF+ AHIW+CPPQRGNNFIFWCHP HQ+TPT++RL  WY
Sbjct:  753 YVSKNVLLFQRINGLDVCQFSLYVQEYGRGEEYGSAGAHPSQRRVYIAYLDSVEYFRPRTARTAVYQEVLSSYLAWARARGFRQAHIWACPPQRGNNFIFWCHPSHQRTPTKERLVEWY 871          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9322.20919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V8_9PHAE1.570e-7699.15Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A835ZGH1_9STRA3.700e-5978.81Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A7S2C9K0_9STRA1.720e-5167.52Histone acetyltransferase (Fragment) n=1 Tax=Dicty... [more]
F0YM02_AURAN4.480e-5166.95Histone acetyltransferase n=1 Tax=Aureococcus anop... [more]
A0A8J2T1L7_9STRA1.280e-4765.81Histone acetyltransferase n=2 Tax=Pelagomonas calc... [more]
A0A482SXR0_9ARCH2.590e-4658.97Histone acetyltransferase n=1 Tax=archaeon TaxID=1... [more]
A0A7R9U6P2_9STRA1.430e-4562.70Histone acetyltransferase n=1 Tax=Pinguiococcus py... [more]
S5RK37_ARTPA1.460e-4557.26Histone acetyltransferase (Fragment) n=1 Tax=Artem... [more]
A0A2L0B3Z3_9COLE1.670e-4556.41Histone acetyltransferase (Fragment) n=1 Tax=Anaca... [more]
A0A7S1U9I3_9STRA2.450e-4563.03Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9322contigEcto-sp13_S_contig9322:2211..2906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score178.3
Seed ortholog evalue2e-42
Seed eggNOG ortholog44056.XP_009041414.1
Model size357
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
EC2.3.1.48
Cds size336
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.4735868-UTR-Ecto-sp13_S_contig9322:2210..22311681464201.4735868-UTR-Ecto-sp13_S_contig9322:2210..2231Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9322 2211..2231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.4993556-CDS-Ecto-sp13_S_contig9322:2231..23491681464201.4993556-CDS-Ecto-sp13_S_contig9322:2231..2349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9322 2232..2349 +
1681464201.5117924-CDS-Ecto-sp13_S_contig9322:2688..29061681464201.5117924-CDS-Ecto-sp13_S_contig9322:2688..2906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9322 2689..2906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9322.20919.1prot_Ecto-sp13_S_contig9322.20919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9322 2232..2906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9322.20919.1

>prot_Ecto-sp13_S_contig9322.20919.1 ID=prot_Ecto-sp13_S_contig9322.20919.1|Name=mRNA_Ecto-sp13_S_contig9322.20919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MFQRVDGVEVCLFSMYVQEFGADAPYFNARRAYISYLDSVEYFRPRKHRT
AVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRD
RLSGWYGNMLK*
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mRNA from alignment at Ecto-sp13_S_contig9322:2211..2906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9322.20919.1 ID=mRNA_Ecto-sp13_S_contig9322.20919.1|Name=mRNA_Ecto-sp13_S_contig9322.20919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9322:2211..2906+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACCGAAGCAAGGCGCTGTCGATGTTCCAACGCGTGGACGGAGTGGAGGT GTGCCTGTTCTCCATGTACGTGCAGGAGTTCGGTGCAGACGCTCCTTACT TCAACGCGAGGCGCGCCTACATCTCCTACCTCGACTCAGGTATAAGGGCG TGCCTGCCACCACGTGTGATGTTCCTGCTGTAACGGTCCGTTCGTTGTGG GGTGGGGATGGTACGGAGGGCCATGTCAGACTGCTCTACCGCCGTGTGCC TCGAGTTTGAGCGCTTGTAAATGATGTCTTGCTTTTTTTTTGCTCAAGAC ACACCGAAGCGCGTTGTGCCACGACATGTTTTCCATACCCGTTTCTGCCC TCTGCCGTACCATGCCGCGCCAAATGAGTGGAGTATTGCCGGCCGAGAAG ACACTGAATCGCGGTGTACAACGCGATGTTTTCCATACCCGTTTCTGCCC TCTGCCGTACCGTGCCGTGCCATTTCAGTGGAGTACTTCCGGCCGAGAAA ACACCGAACCGCCGTGTACCACGAGATCCTGGTCGCGTATCTGGACTGGC TGCGACGTCGGGGCTTCAAGGCCGCCCACATCTGGAGCTGCCCTCCGCAG CGCGGCAACAACTTTATCTTCTGGTGCCACCCCCTGCACCAAAAGACGCC CACTCGCGACCGGCTTTCGGGGTGGTACGGGAACATGCTCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9322:2211..2906+

>mRNA_Ecto-sp13_S_contig9322.20919.1 ID=mRNA_Ecto-sp13_S_contig9322.20919.1|Name=mRNA_Ecto-sp13_S_contig9322.20919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9322:2211..2906+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCAACGCGTGGACGGAGTGGAGGTGTGCCTGTTCTCCATGTACGT
GCAGGAGTTCGGTGCAGACGCTCCTTACTTCAACGCGAGGCGCGCCTACA
TCTCCTACCTCGACTCAGTGGAGTACTTCCGGCCGAGAAAACACCGAACC
GCCGTGTACCACGAGATCCTGGTCGCGTATCTGGACTGGCTGCGACGTCG
GGGCTTCAAGGCCGCCCACATCTGGAGCTGCCCTCCGCAGCGCGGCAACA
ACTTTATCTTCTGGTGCCACCCCCTGCACCAAAAGACGCCCACTCGCGAC
CGGCTTTCGGGGTGGTACGGGAACATGCTCAAGTGA
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