mRNA_Ecto-sp13_S_contig93216.20918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93216.20918.1
Unique NamemRNA_Ecto-sp13_S_contig93216.20918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig93216.20918.1 vs. uniprot
Match: A0A6H5KCH7_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.660e-25
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    4 QDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDVPFRACSIP 156
            QDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDV FRACSIP
Sbjct:  267 QDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDVSFRACSIP 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93216.20918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCH7_9PHAE6.660e-2598.04AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93216contigEcto-sp13_S_contig93216:165..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_005570.1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.4323606-CDS-Ecto-sp13_S_contig93216:164..3201681464201.4323606-CDS-Ecto-sp13_S_contig93216:164..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93216 165..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93216.20918.1prot_Ecto-sp13_S_contig93216.20918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93216 165..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93216.20918.1

>prot_Ecto-sp13_S_contig93216.20918.1 ID=prot_Ecto-sp13_S_contig93216.20918.1|Name=mRNA_Ecto-sp13_S_contig93216.20918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
KQDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDVPFRACS
IP
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mRNA from alignment at Ecto-sp13_S_contig93216:165..320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93216.20918.1 ID=mRNA_Ecto-sp13_S_contig93216.20918.1|Name=mRNA_Ecto-sp13_S_contig93216.20918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93216:165..320+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACAGGACAAGCTTTCGCGGCCGTGGCGAGTGTCCGGCGAAGTGCTCAT
GCTAATGGGGGAGTCGGACGAGTCAGTGGCGCCGCTCCTGGAGCAAGCGG
ACTTCGTGAGGGGCTACGTGCCGGAAGACGTGCCGTTCCGGGCGTGCTCG
ATCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93216:165..320+

>mRNA_Ecto-sp13_S_contig93216.20918.1 ID=mRNA_Ecto-sp13_S_contig93216.20918.1|Name=mRNA_Ecto-sp13_S_contig93216.20918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93216:165..320+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACAGGACAAGCTTTCGCGGCCGTGGCGAGTGTCCGGCGAAGTGCTCAT
GCTAATGGGGGAGTCGGACGAGTCAGTGGCGCCGCTCCTGGAGCAAGCGG
ACTTCGTGAGGGGCTACGTGCCGGAAGACGTGCCGTTCCGGGCGTGCTCG
ATCCCA
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