mRNA_Ecto-sp13_S_contig9321.20917.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9321.20917.1
Unique NamemRNA_Ecto-sp13_S_contig9321.20917.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.750e-15
Identity = 111/228 (48.68%), Postives = 119/228 (52.19%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKAC--GNGGDWEQALV------GRAPSSS-----------------------------------VRRV----------------------------------RMPGLGIRPSVESYSIGLTXXXXXXXXXXXXVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 453
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV   ++F  ++ AC  G G DW  A+       G   SS                                    V+++                                  RMPGLG             XXXXXXXXXXXX    EMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV---VTFSAVISACCGGGGSDWRVAMQILSEARGSGGSSDGANTDGGGMKLDVVIYNTVMSLCADAGEWKQVLHLVKQMSEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRMPGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 522
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.490e-15
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKAC--GNGGDWEQAL 171
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV   ++F  ++ AC  G G DW  A+
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV---VTFSAVISACCGGGGSDWRVAM 166
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: D7FKL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.490e-13
Identity = 69/81 (85.19%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:  211 MPGLGIRPSVESYSIGLTXXXXXXXXXXXXVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 453
            MPGLGIRPSVESYSIGLT            VLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV
Sbjct:    1 MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIA5_9PHAE1.750e-1548.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL0_ECTSI2.490e-1571.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKL1_ECTSI2.490e-1385.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9321contigEcto-sp13_S_contig9321:3..5174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score80.9
Seed ortholog evalue1e-12
Seed eggNOG ortholog2880.D7FKL0
Model size816
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size816
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9321.20917.1prot_Ecto-sp13_S_contig9321.20917.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9321 3..5174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.3172817-CDS-Ecto-sp13_S_contig9321:2..2001681464201.3172817-CDS-Ecto-sp13_S_contig9321:2..200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 3..200 -
1681464201.3435428-CDS-Ecto-sp13_S_contig9321:1495..17051681464201.3435428-CDS-Ecto-sp13_S_contig9321:1495..1705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 1496..1705 -
1681464201.3544593-CDS-Ecto-sp13_S_contig9321:2206..22621681464201.3544593-CDS-Ecto-sp13_S_contig9321:2206..2262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 2207..2262 -
1681464201.367109-CDS-Ecto-sp13_S_contig9321:2846..29921681464201.367109-CDS-Ecto-sp13_S_contig9321:2846..2992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 2847..2992 -
1681464201.3781402-CDS-Ecto-sp13_S_contig9321:3838..39421681464201.3781402-CDS-Ecto-sp13_S_contig9321:3838..3942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 3839..3942 -
1681464201.398041-CDS-Ecto-sp13_S_contig9321:5072..51741681464201.398041-CDS-Ecto-sp13_S_contig9321:5072..5174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9321 5073..5174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9321.20917.1

>prot_Ecto-sp13_S_contig9321.20917.1 ID=prot_Ecto-sp13_S_contig9321.20917.1|Name=mRNA_Ecto-sp13_S_contig9321.20917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKACGNG
GDWEQALVGRAPSSSVRRVRMPGLGIRPSVESYSIGLTACAKGGRWQEAL
VLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPN
VISCNAAIKACGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAG
QSEQASELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMS
LAGVTPDSVTYNSLIVACGKGG
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mRNA from alignment at Ecto-sp13_S_contig9321:3..5174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9321.20917.1 ID=mRNA_Ecto-sp13_S_contig9321.20917.1|Name=mRNA_Ecto-sp13_S_contig9321.20917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5172bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9321:3..5174- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCGTCACCTTCTCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTGTGTGTACCTCAATGACCAGGGCCGGCAACTTCTTCCCA
CTGCTGAACCTTGCAGTGTTTTTTGAGGGTAGAACAGCAGACAAGGCGGA
AGATCTGGTTCCTGCCCTCAATGCCAGGTTTTCAGGTAACTTTGTATTTG
CTTTCGCTCTTGAAGAAAACGACTCTTTCCAACAATTCACATCTTATGGC
CGTTCTGTTGATAGAGTCAAGTCCGACCTAATAGAGAACGCGCCACCACT
TGAGAACCCACGGGTGAAACAATGAGCCCAGCAATGAATAAAATTTTAAA
ATTGAGCTAAAACTTATGTTTCGACCATTCGTAGCATGACCCCAGGAATA
AGAAACCCCAGCCTCGGCCGAAACTAGAGGTTCTTGTAGGTGATGGCGCG
TTCTGTATGCATATCCTCGGGGTTTCTGGTATTTCAGGTGGGGGCTTGTG
TAGCCCCGACCTCGAGCAGAATCTCAAATCTCCGGAAACGACCTCAAACA
GAGTTGCAAATCGCGGAGAATAGCGTGGCGTTGTGCTGACGCTTCGGGTG
TTGCAGGAATGCTTTCGGCCACAAGGCTAACATCGGTTGTGTCCGCGCCC
GACTGACTCCCCCGCTCCCCCCCCCCCCCCCATTTGACCGCGATGGTACC
AGCACCGATGGCGGCGGGGTGAAGCTTGACGTGGTTATCTACAACACGGT
CATGTCCCTGTGCGCGGACGCGGGGGAGTGGAAGCAGGTCCTGCACCTGG
TGAAGCAGATGTCAGAGGAGGACGGGATTAAGCCGGACCGCATCAGCTTC
GACTGCCTCATGAAGGCCTGCGGCAACGGTGGAGACTGGGAGCAAGCGCT
GGTAGGCCGAGCCCCGAGCAGTAGCGTTCGCAGGGTGTTTCGATTATTCA
AGTGAACTCGCTGAATAGAGTATGCAATCGGGGGAAGTTCGGTTACAGCA
GTTGCCTTGGCGGGGTATTGGGATTTCGTGAACATGTTGAACGAAGCTCA
AGTTGGGTTACCGTTGGGGATAGGGTCTGCGTACTGTACCCCCTCCCTGT
TCTACCGTTTTTCCACGTATCGAAGGCGGTTCGACCCCGGGGGGGGTGGG
GGAGGAGGTTGCGCCTTGGCTGTTTGTTATGTTGCCTCTAGCCTGCTGGG
CCGACATGTCCTCACAAGCGTGCGTTACAGGAAAGGCATGGCGATTCATT
TGTGGTGTGGGAGGGGGGGGGGGGGGGGAGCAAGACGCAAAAGTCTCGAG
AAATTCGCGTGCTGGTTATGAAAGTATGGTATTATAGTAGCTTCCCCACT
GGCGATCACTTCTTGCGTGTCGTTAGAATTGTGTGGGCACCGAAGAAGTT
GTTGGAATGGCGCGTCCTGTTTTCGGCGCTAGTTCTCTGTCTCTCGCTAA
TTGCTGATGTTTGTTTAATACCCATCGGTGCAGACGGTCATTTTTTGATT
TTTTTTTTCATATATTTATTTAAAACGACTGACAGCAGCAGTTCCCCCTG
CCTGGTTCTTATCGACGCACCTCTGTTGTGTCTCGTGACAAGTCATTTTA
AGATGCATTTTCTTTTTACGAAAGCGCTGATAACACAGTAGCGCCCCACG
CCTGGTTTTTGTCGACTTGCCCTTGTTGTATCTCGTAGAACGGGGCGTTT
TTGCAGGCTTCTTTTTTTGTGGTGAAACGGCTGATGGCAGTGTCTCTTGG
CTGGTTTTTGTCTACCCCCAGGCCGTCCTAAGGAGAATGCCGGGTCTGGG
GATTCGGCCTTCCGTGGAGAGCTACTCGATCGGATTGACGGCGTGCGCGA
AGGGAGGCAGGTGGCAGGAAGCCCTTGTGCTGCTGCGGGAGATGGAGGAG
GATGACGAGATTAAACTGGACGTGGTCGGTGAGGCAGTCGAGAGACAGGC
AGATGGACACACACACGCACACACAGAGACACGAGGGAGAGGGAAGGACG
CAGAGAAAGAGAGACACACGCAGAGACATACAGAGAGACACACACATACA
CACAGAGAGAGACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGCGGTGTGTCGCGTTGCTCCTGAGGGTGTGAAACAACTCAACATTCCA
TCTGTCACGCGATTCCATCGCCCTTCAGTACCCACCTTACCGTACCCAGA
AAAACCCGTTGGATTGTCGCTCAAGTTGTTGTTCCCGATCCCGTTCTCGG
GAAAACCGCCGGTGTCGGGCCAGCCTGGCAACACCCCAACCTGCCTCACG
CGGCGACCCCTATTGGAAACCCTGCCGCGCTGAAACCACTGAAGCGTTGA
TTGCTGCTCGCCCTCTTCGTGTGCCCTGCCGCTGTTTCGTGTCCTACTCA
GTGTCGCTCCTAGTCGGTGGAACGACCCTGGTCTCGCCTTTGACTCACCG
TTCGCTTCCTCTACCGTTGGTCGCTCTCGTCCTTTTTTGTTGTTGTTGTT
GTTGTTGTTCAGCGTACTCCGCGGCCATCACGGCGTGCGCTAACGGTGGG
CGGTGGCAGGAGGCAGTGGTGAGTGAACTATCCGCGGGGGGGGGTAGTTC
TAATGGAAACGCACGCCGTGGTCGTTGCACCGTTGACCTCGCATCTCTAC
AAGGCTGGGACGGAGCGATATGCCGGGGTTTCCCCGGCCCAGGCTACGTG
TCACGTGGGCATACGTATGAACGCGGTGCTCCGCGTGGCTGTCTGTGATT
TCGAGGGAGTTTGTCGTGTTGGCTGTGATGGGCAAGGCCGCCGTAGGGTA
GGTGAAGGAGCAGCCTTCAACGACAGCATACAGTGGAACCGCCATGCTGT
GGGGAAGAAAATGAGAGAAAAACTGTCCTCTCGTACGATCTCTGGCATCT
GAGGAAGTGCAGGAAATGCGCACTTTGAGAAGAAAATGACTCTGCCGCCC
CCCCCTTCCGCGCCCTTACGTGAAGCAGTTCGGCCCATCCCCCCCCTTGG
TCCCAGTCCCTCCTCGTGTCACTCCCCCCCGGCCTCTCCTCTAAACCTCC
CGCCCCGTCTCACCATCAGGCAATCTTGAGCGACATGCCCAACGTCGGTG
TCCGCCCGAACGTGATTAGCTGCAACGCCGCCATCAAGGCTTGCGGGGAG
GCCGGACAGTGGCAGCACGCCCTCTCCATCCTTCGCGGCATGTCCAAGGC
CGGGCTATCTCCCGACGCCATCAGCTACAACACGGCCATCTCTGCCCTGG
GGGTCGCGGGCCAGAGCGAGCAGGCGAGTGTCTTCTTGCTGCATTTCCTG
GGTTGAGGGGGAGGGGGTCCCATGAAAACGGCATTACGGGCCATCGTCAC
GCAGGGTGGCCTTGCACTAAGACGTTTTTCATGGGTGTGTGTGTGTGGGT
ACTCATAAGCGTGCGTGCTGTAGTCGTCAGACCATCGACTTCGTATCCCT
ACAAGGCCGGGACGTGGATAGCTCGCGGGTTCTCACCAGACCAGGCTCAA
AGCGCGAAGCGCCCTGAGATATTCGGCGAGTCGCGTGGAGGGTGCGCTGC
ATCCTGGGGGGGCAGCCGTTTGATACAGCGCGTGACATAACACCAATGCC
TGGGGTCTAGCGTTGCTCTTGAGGGTGGCTTGGCCGAGAGGGCGTGCAGG
CATGTCTCTTGCTGCTTGTTTTTATGGTTGGATGGGGGGGGTACTCGCGT
TTTGCTTCCTTAGTTGTTAGTCCATTGACCACACGTCCTCGCGAGGACGG
AGGAGGAGGTTGGGGAAGACCGCACCATGTCTCTACCACCCTGTAGCGTC
AAGGCTCTCATCCATTTTGCGAAGCGAGAGAGGCGGGGTGTAGTGTGGGT
CTGCGGCACGAACACAGCGAGGGTTTCAGCCGACCGCCCGTCTTGGTCTC
ATGTGGTCGATTCTCGTCTTGCTTCCCTAAAGTCGAGTCTGGTGTCTGTG
GTCGACTACTGTCGTTTGCACTCACCGTGCGCGTGCTCATGCTCATGCGA
TGTCTAGTCTCTGTGCGGATTGTAGTACTCAAGGGCGATAGCCGACGCGG
CCGAGGCGTTCTGTAGACTACACAAGCCTCCTCCGGTCTGCCGGCTACAT
GCCCCCCTGCCACCGGACAAGACATTTCCCCATAGCAAGCACTGCGTGAG
TCTTTGATAAAAAGCATCGACCCGCGCTAACCGGCCGCCCAATGAGAAGG
CGTCAGGCTCAGTGCCGGTAAAAACAGAGTATGCTTTGGTTTGGGACGAC
CTCGTGAGGGGGTGTCGTGGTGGAAAGGCTGAAGTGCTTGTGCGTGGGTT
GGGTGTTTTTTGCCCGTGTGTTCTCGGCACCAGTTTTGACCGTGGTTGGC
TCACCAGCCGGGGCTACACGCGGAGGCAGCCAGGCGAAGTCCCAGCATAA
GCATACGTGTATCCTTTGTAGTGGCGGTGCAGGCAATACCACCCCCCCCC
TGTGGGATGAATGCTCCGTCCTTTCGAGGACGGGTAGTCAATGGTCTAAC
CGCTCAGGCATACAAAACAGAAAGAGTACCCCTCCCCCCTCCCCCCCCCC
CCCCCCCCCCCCGGGCAGGCGCAGGAGCTCATGTCGGAGATGTCTCGACT
TGGCATCGAGCCTACCGTGGTAACGTACAACTCGGCCATCGCTGCCATCG
CGCGTGGCGGCGGCGGGCAATGGCGCCAGGCGGTCGCCCTCGTGAAGCAC
ATGTCCCTGGCGGGGGTAACTCCGGACAGCGTCACGTACAACTCCCTGAT
CGTGGCGTGCGGCAAGGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9321:3..5174-

>mRNA_Ecto-sp13_S_contig9321.20917.1 ID=mRNA_Ecto-sp13_S_contig9321.20917.1|Name=mRNA_Ecto-sp13_S_contig9321.20917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9321:3..5174- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCCCGGACCGCATCAGCTTCGACTGCCTCATGAAGGCCTGCGGCAACGGT
GGAGACTGGGAGCAAGCGCTGGTAGGCCGAGCCCCGAGCAGTAGCGTTCG
CAGGGTGAGAATGCCGGGTCTGGGGATTCGGCCTTCCGTGGAGAGCTACT
CGATCGGATTGACGGCGTGCGCGAAGGGAGGCAGGTGGCAGGAAGCCCTT
GTGCTGCTGCGGGAGATGGAGGAGGATGACGAGATTAAACTGGACGTGGT
CGCGTACTCCGCGGCCATCACGGCGTGCGCTAACGGTGGGCGGTGGCAGG
AGGCAGTGGCAATCTTGAGCGACATGCCCAACGTCGGTGTCCGCCCGAAC
GTGATTAGCTGCAACGCCGCCATCAAGGCTTGCGGGGAGGCCGGACAGTG
GCAGCACGCCCTCTCCATCCTTCGCGGCATGTCCAAGGCCGGGCTATCTC
CCGACGCCATCAGCTACAACACGGCCATCTCTGCCCTGGGGGTCGCGGGC
CAGAGCGAGCAGGCGAGTGAGCTCATGTCGGAGATGTCTCGACTTGGCAT
CGAGCCTACCGTGGTAACGTACAACTCGGCCATCGCTGCCATCGCGCGTG
GCGGCGGCGGGCAATGGCGCCAGGCGGTCGCCCTCGTGAAGCACATGTCC
CTGGCGGGGGTAACTCCGGACAGCGTCACGTACAACTCCCTGATCGTGGC
GTGCGGCAAGGGGGGG
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