mRNA_Ecto-sp13_S_contig12511.2091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12511.2091.1
Unique NamemRNA_Ecto-sp13_S_contig12511.2091.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12511.2091.1 vs. uniprot
Match: D7FPW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW0_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 8.150e-52
Identity = 104/122 (85.25%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:    1 MGAGLAAQRGWPQDQENDPSSPQRTGTSXXXXXXXXXXXXXXXXXXXXXLFEETADSGEVQPLEDSDFARNYGSSASLANLVPLERKRWSSIEAENGNASVGSSSAGDATEDNHLEARDGRD 366
            MGAGLAAQRGWPQ QE+DPSSPQRTGT XXXXXXXXXXXXXX       LFEETAD+ EVQPLEDSDFARNYGSSASLA+LVPL+RKRWSSIEAENGNASVGS SAGDA ED+HLEARDGR+
Sbjct:    1 MGAGLAAQRGWPQGQEDDPSSPQRTGTXXXXXXXXXXXXXXXSRRSSLLLFEETADTSEVQPLEDSDFARNYGSSASLASLVPLDRKRWSSIEAENGNASVGSGSAGDAAEDDHLEARDGRE 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12511.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPW0_ECTSI8.150e-5285.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12511contigEcto-sp13_S_contig12511:2182..2547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008500.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.6393516-CDS-Ecto-sp13_S_contig12511:2181..25471681462667.6393516-CDS-Ecto-sp13_S_contig12511:2181..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12511 2182..2547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12511.2091.1prot_Ecto-sp13_S_contig12511.2091.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12511 2182..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12511.2091.1

>prot_Ecto-sp13_S_contig12511.2091.1 ID=prot_Ecto-sp13_S_contig12511.2091.1|Name=mRNA_Ecto-sp13_S_contig12511.2091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MGAGLAAQRGWPQDQENDPSSPQRTGTSSSSGEEPPQSSDLHRRRSSLLL
FEETADSGEVQPLEDSDFARNYGSSASLANLVPLERKRWSSIEAENGNAS
VGSSSAGDATEDNHLEARDGRD
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mRNA from alignment at Ecto-sp13_S_contig12511:2182..2547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12511.2091.1 ID=mRNA_Ecto-sp13_S_contig12511.2091.1|Name=mRNA_Ecto-sp13_S_contig12511.2091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12511:2182..2547+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCAGGGTTAGCCGCACAGCGCGGCTGGCCTCAGGACCAAGAGAA
CGACCCCTCATCGCCGCAGCGCACGGGAACCTCGTCGTCGTCGGGAGAAG
AGCCCCCACAAAGCAGCGATCTGCACAGAAGAAGGAGCTCCTTGCTGTTG
TTCGAGGAAACCGCTGACAGCGGCGAGGTGCAACCGCTAGAGGACAGCGA
CTTCGCGCGCAACTACGGCTCTTCTGCAAGCCTGGCGAACCTCGTGCCCC
TCGAAAGGAAGCGGTGGTCTTCGATCGAGGCAGAGAACGGCAACGCGAGC
GTGGGCAGCAGCAGCGCTGGGGATGCGACGGAGGACAATCACCTTGAGGC
ACGCGATGGCCGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12511:2182..2547+

>mRNA_Ecto-sp13_S_contig12511.2091.1 ID=mRNA_Ecto-sp13_S_contig12511.2091.1|Name=mRNA_Ecto-sp13_S_contig12511.2091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12511:2182..2547+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCAGGGTTAGCCGCACAGCGCGGCTGGCCTCAGGACCAAGAGAA
CGACCCCTCATCGCCGCAGCGCACGGGAACCTCGTCGTCGTCGGGAGAAG
AGCCCCCACAAAGCAGCGATCTGCACAGAAGAAGGAGCTCCTTGCTGTTG
TTCGAGGAAACCGCTGACAGCGGCGAGGTGCAACCGCTAGAGGACAGCGA
CTTCGCGCGCAACTACGGCTCTTCTGCAAGCCTGGCGAACCTCGTGCCCC
TCGAAAGGAAGCGGTGGTCTTCGATCGAGGCAGAGAACGGCAACGCGAGC
GTGGGCAGCAGCAGCGCTGGGGATGCGACGGAGGACAATCACCTTGAGGC
ACGCGATGGCCGGGAC
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