prot_Ecto-sp13_S_contig930.20892.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig930.20892.1
Unique Nameprot_Ecto-sp13_S_contig930.20892.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length411
Homology
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BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 701 bits (1809), Expect = 4.250e-253
Identity = 365/410 (89.02%), Postives = 377/410 (91.95%), Query Frame = 0 
Query:    1 MENGAQDNHTRENGKSGGEMGAKATATAAGGAPLRASRKTEGVLAAISIKINDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRKRVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGILLARKELVKPLVGLYCDAELLFREQRPAASPSATSGVGFGVGATEQVSGHVAVCHIHRRRGVLWRDMLQSRIDPRAGFGEYLISQGLARLREEQWWATADRNGLNPSSAAVAAASRPKSAVSTQTHRHRTGAASTGESGDDSEQPFPALKRLLEDREIFVAAEGDAKRASRGLWNLPQRGEEGGGRDSAAVGRAKSLIDGVAGIARALTGLFGRWR 410
            M +GAQDNH RENG SGGEM AKA ATAAGGAP +  R TE VLA ISIKINDNL LFRAGTATMMVGSALA+SFLVYRRGVHGFRSAAQVPASYFERRKR+RVRIAKISEAPAAPPTFD PP+DGRGRFD AGV I T RPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEG+LLAR ELVKPLVG YCDAELLFREQR AASPSAT+GVGFGVGATEQVSG VAVCHIHRRRGVLWRDMLQSRIDP+AGFGEYLISQGLARLREEQWWA ADRNGL P+ A V AA+RP SAVS QTHRHRTGAASTGE GDDSEQPFPALKRLLEDREI VAAEGDAKRASRGLW+LPQRG EGGGRDSAA GRAKSLI+GVAGIAR LTGLFGRWR
Sbjct:    1 MGDGAQDNHARENG-SGGEMRAKAAATAAGGAPAQPPRITERVLATISIKINDNLRLFRAGTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKDGRGRFDTAGVAIPTTRPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGGEGGGRDSAAAGRAKSLIEGVAGIARVLTGLFGRWR 409
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BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Match: A0A835YR19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR19_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-8
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 0 
Query:   33 PLRASRKTEGVLAAISIKINDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRKRVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLHAEHITLPRRLLRLPP 165
            P   +R       A+S  +N +L  +R   AT+++G A  V+F+V+RRGV GFRS   +P  YF  R+R+ VR+                  +G       G++++T R          EH T  RRLLRL P
Sbjct:   15 PASKNRGAANTSHAVSESVNAHLRAYRMTMATLIIGGAAGVAFVVHRRGVRGFRSPLDLPEGYFVNRRRIGVRVVAA---------------EGHATDRKDGLQMVTLR---------LEHFTPARRLLRLLP 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE4.250e-25389.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YR19_9STRA1.350e-832.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..410
NoneNo IPR availableTMHMMTMhelixcoord: 55..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig930contigEcto-sp13_S_contig930:1378..5288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig930.20892.1mRNA_Ecto-sp13_S_contig930.20892.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig930 888..5288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig930.20892.1 ID=prot_Ecto-sp13_S_contig930.20892.1|Name=mRNA_Ecto-sp13_S_contig930.20892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
MENGAQDNHTRENGKSGGEMGAKATATAAGGAPLRASRKTEGVLAAISIK
INDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRK
RVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLH
AEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGILLARKE
LVKPLVGLYCDAELLFREQRPAASPSATSGVGFGVGATEQVSGHVAVCHI
HRRRGVLWRDMLQSRIDPRAGFGEYLISQGLARLREEQWWATADRNGLNP
SSAAVAAASRPKSAVSTQTHRHRTGAASTGESGDDSEQPFPALKRLLEDR
EIFVAAEGDAKRASRGLWNLPQRGEEGGGRDSAAVGRAKSLIDGVAGIAR
ALTGLFGRWR*
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