mRNA_Ecto-sp13_S_contig930.20892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig930.20892.1
Unique NamemRNA_Ecto-sp13_S_contig930.20892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 702 bits (1812), Expect = 8.090e-251
Identity = 365/410 (89.02%), Postives = 377/410 (91.95%), Query Frame = 2 
Query:  491 MENGAQDNHTRENGKSGGEMGAKATATAAGGAPLRASRKTEGVLAAISIKINDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRKRVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGILLARKELVKPLVGLYCDAELLFREQRPAASPSATSGVGFGVGATEQVSGHVAVCHIHRRRGVLWRDMLQSRIDPRAGFGEYLISQGLARLREEQWWATADRNGLNPSSAAVAAASRPKSAVSTQTHRHRTGAASTGESGDDSEQPFPALKRLLEDREIFVAAEGDAKRASRGLWNLPQRGEEGGGRDSAAVGRAKSLIDGVAGIARALTGLFGRWR 1720
            M +GAQDNH RENG SGGEM AKA ATAAGGAP +  R TE VLA ISIKINDNL LFRAGTATMMVGSALA+SFLVYRRGVHGFRSAAQVPASYFERRKR+RVRIAKISEAPAAPPTFD PP+DGRGRFD AGV I T RPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEG+LLAR ELVKPLVG YCDAELLFREQR AASPSAT+GVGFGVGATEQVSG VAVCHIHRRRGVLWRDMLQSRIDP+AGFGEYLISQGLARLREEQWWA ADRNGL P+ A V AA+RP SAVS QTHRHRTGAASTGE GDDSEQPFPALKRLLEDREI VAAEGDAKRASRGLW+LPQRG EGGGRDSAA GRAKSLI+GVAGIAR LTGLFGRWR
Sbjct:    1 MGDGAQDNHARENG-SGGEMRAKAAATAAGGAPAQPPRITERVLATISIKINDNLRLFRAGTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKDGRGRFDTAGVAIPTTRPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGGEGGGRDSAAAGRAKSLIEGVAGIARVLTGLFGRWR 409
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BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Match: A0A835YR19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR19_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.760e-8
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 2 
Query:  587 PLRASRKTEGVLAAISIKINDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRKRVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLHAEHITLPRRLLRLPP 985
            P   +R       A+S  +N +L  +R   AT+++G A  V+F+V+RRGV GFRS   +P  YF  R+R+ VR+                  +G       G++++T R          EH T  RRLLRL P
Sbjct:   15 PASKNRGAANTSHAVSESVNAHLRAYRMTMATLIIGGAAGVAFVVHRRGVRGFRSPLDLPEGYFVNRRRIGVRVVAA---------------EGHATDRKDGLQMVTLR---------LEHFTPARRLLRLLP 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig930.20892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE8.090e-25189.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YR19_9STRA2.760e-832.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig930contigEcto-sp13_S_contig930:888..5288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1723
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005150.1
Cds size1233
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig930.20892.1prot_Ecto-sp13_S_contig930.20892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig930 1378..5288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464199.6030898-UTR-Ecto-sp13_S_contig930:887..13771681464199.6030898-UTR-Ecto-sp13_S_contig930:887..1377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig930 888..1377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464199.6154532-CDS-Ecto-sp13_S_contig930:1377..15531681464199.6154532-CDS-Ecto-sp13_S_contig930:1377..1553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig930 1378..1553 +
1681464199.6266782-CDS-Ecto-sp13_S_contig930:2891..29641681464199.6266782-CDS-Ecto-sp13_S_contig930:2891..2964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig930 2892..2964 +
1681464199.638194-CDS-Ecto-sp13_S_contig930:3224..34141681464199.638194-CDS-Ecto-sp13_S_contig930:3224..3414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig930 3225..3414 +
1681464199.6500258-CDS-Ecto-sp13_S_contig930:3922..42031681464199.6500258-CDS-Ecto-sp13_S_contig930:3922..4203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig930 3923..4203 +
1681464199.665846-CDS-Ecto-sp13_S_contig930:4775..52881681464199.665846-CDS-Ecto-sp13_S_contig930:4775..5288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig930 4776..5288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig930.20892.1

>prot_Ecto-sp13_S_contig930.20892.1 ID=prot_Ecto-sp13_S_contig930.20892.1|Name=mRNA_Ecto-sp13_S_contig930.20892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
MENGAQDNHTRENGKSGGEMGAKATATAAGGAPLRASRKTEGVLAAISIK
INDNLGLFRAGTATMMVGSALAVSFLVYRRGVHGFRSAAQVPASYFERRK
RVRVRIAKISEAPAAPPTFDSPPQDGRGRFDAAGVEIITARPKGSDVLLH
AEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGILLARKE
LVKPLVGLYCDAELLFREQRPAASPSATSGVGFGVGATEQVSGHVAVCHI
HRRRGVLWRDMLQSRIDPRAGFGEYLISQGLARLREEQWWATADRNGLNP
SSAAVAAASRPKSAVSTQTHRHRTGAASTGESGDDSEQPFPALKRLLEDR
EIFVAAEGDAKRASRGLWNLPQRGEEGGGRDSAAVGRAKSLIDGVAGIAR
ALTGLFGRWR*
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mRNA from alignment at Ecto-sp13_S_contig930:888..5288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig930.20892.1 ID=mRNA_Ecto-sp13_S_contig930.20892.1|Name=mRNA_Ecto-sp13_S_contig930.20892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig930:888..5288+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGTGTCTTTTCCCCGTTCCCATGCAGAGGAAAAGTGTACGTCGAGTA
GTGTTACCAGATACCAGCTGGCTTGCCCACGGCGCAGGAGGTGCGGCGAG
AAGAGAATAACGAGATTCGACTACGTACGACAGTCCCGCCGAGAACCCCC
CGCCTCAAATCGAAGGCTCGACACTCGTCATCAACGCCCCCCCAACACTC
AACACTCCCTCCAACACACGGAGCACGTGAACTGGCGAGCACTGCGTACT
TACGCAATTACTGCAGTATCTTCGCAACGTTCCGGTGCTGTGCCGTTGGG
CAGGCATAAGCAGATAATCGGCCAACAGGGAATCTCAGTTTCCCCTGTGT
ACGCCGCATAGATGGGCGCAGCAGCCGTGTACAGTGTACAGAGTATTTGC
GCACGGAAACGAGAGCAGGAGGCAAGGTGGGGAAGGGAGGTCAACAGCAG
TGCTGCTTTTCAGTGAGCAACTTGACAGCGCACCAGCTCCATGGAGAACG
GCGCGCAAGACAACCATACGCGGGAAAATGGAAAAAGTGGCGGCGAAATG
GGCGCCAAGGCAACGGCGACAGCAGCAGGGGGGGCGCCCTTGCGGGCTTC
GCGCAAAACCGAGGGAGTGCTTGCCGCGATATCCATCAAGATTAACGACA
ACCTCGGGTTATTCCGGTGGGCTGAGGGCGATTTAACGCTCGTAGATATA
CCCATAGCGGAAAGGACACCTCATATGGTCTTCACGCGCAGTAATACGTC
ACTGGAACTTGAAGAAGCAGTAGTTTTTGTTAGTAGTGAATCGAGATGCA
GAAAAGGGGTTTTGACGCTGGCTCTTTTCCGATGGTTTAATCCTATACAA
AGAAAGAAAGCAACCTTCCCGCCGGGGTTAGGTTAGGTTTTCTATTGTCA
GCAGTAGAGGACACCTTGAAGAGCCGTCGTGCGTGCTGGCACGTTCATTT
TTGCAACTGGAGCTGAAATGTCGAAGGTCGCAGCAGCCTCCGAAAAGAGT
CGAAATCTGCGCCGGAACCAAGCGGCATCCAACATTTGTCACAGCCATGC
TCACCGCCACGGACCGTAAACCCCGGAACGCAGAGGTGTCAGCAGTAGCT
AAGCTACTAAATGTAGACCCGTAGTTCAGGAGATTGGAGTCGGTGGCGGC
GAGCATGGCTGTGACAAATGTTGGATACCGCTTGGTTCCGGCGCAGATTT
CGGACTGTTTTCGAAGGCAGCTGCGGCCTTCGATATTTCAGCTCCAGTAG
TAAACCTGAACGTGCCAGCACGCACGACGCCTCTTCATGATGTCCTTTAC
TGCTGATAATAGAATGCCTAACCTCACCCTCAAAACTGACCTTGTTTGAG
CGCCTTCCGTTTTGGCTCTTTTGACTTTAATTTAGAATAGTGCGAAGTTT
TTTCTTGATTTAAATGTTAGCCTTTGGAGGTAGACGCGTGAAATGTACGT
TTTGAGCAGCCTCTTGTACTGCCGCCCTGTTAGAGGATCAACGGTTTCTG
TTTTTCGCGGTGCCTTTGTCTGGTCTGGTGTGTCTTTTGTGCAATTCTGG
TGATACTGCGTTTGTTTTCGAAATTAGTCAACATCAAAATTTGTCTTCTG
CACCCCGTTACGCGCCTTCGCATTTGTTCATGCCCCGCTCTTGTTTTCAC
ACGGGAGCGTTCCCACGGGTGTTTATTTCTTTGAACAATTCCGACAGCAA
AAACAATCCGCTGGCCATTACAGAGCATCCCGGCGATGACGGGGGCTCGT
TGACTTGGATTGGTTCCTGAAACTTGGGCACCCAGGAGCGCGGGGTCAAG
CTTTCTGAAAGGCTGAACTATCGCATCCGACCACATCCCCAGCGACCTAT
GCGTGCCTGAGAGTGTGTCGGAGTGCGCATGCCGTATCTCCATATCGGAG
CAGAACCGTTCCAGGTGTCTCGTGCATTTCATGACTGTCCCTGCCTTACC
ACCTTCCGCGGGTCCCGGTTCGGTTGCTCGCGTTTCTGCTACGGGTTTTG
CCAGGGCTGGCACGGCAACTATGATGGTGGGTTCGGCGCTGGCCGTCTCT
TTTCTCGTCTACCGCCGGGGTGTGCACGTGAGGCTTGTTTGGGGATAACC
TTCATACATCTGTTGACGGCGGCGTTACAAGAACTTTGTGCGCAAATCAG
CTTGCTTCGATTGTTGTCTCCGACAATACAGAGGCGTCTTGAACTGCTGT
AGGCTCTTGTAAGCATCCTCCCCACACAAAATCCGTCTTGTTCCCGTCAT
TGCCGTTGGTGACGTTGGTAGCAAACACTTGAGATGCACCTGTTTTCTCT
AACAACCAAGACTCGCTTGCACGACCCTTGCATTCAGGGATTTCGTTCGG
CCGCTCAGGTGCCCGCGTCGTATTTCGAACGCCGAAAAAGGGTGCGTGTC
CGCATAGCGAAGATTTCCGAAGCACCTGCAGCGCCTCCAACCTTCGACAG
TCCTCCGCAAGACGGCCGTGGTCGCTTCGACGCTGCCGGAGTAGAAATCA
TCACGGCCAGACCCAAGGGTTCAGACGGTGTGTGGGACGACCTTTCTACA
CATCATTTTGTAGGTGGCGTTTGAGAGGTCGCTTTCCTATCACCGGGGTA
TCAAAGTCCACGTTCGACGTCCAGTACACACACACCAATGAACGCACGAG
TTCGATGCATATTGCAGCATGTTTACTCGCAACACCTGTGTGGATGCTTT
GTTAGTCGCAATCCTTGCATGTTTAATCGGGCGTATTTACCTATGCTGCT
GTTTGTCAAAGGAGGTGCGGTTTTCATCGCGACTTTTCCGGTTGCCACCG
CAGAGACAGAGAGAACAGAAAGAGAGAGAGAGAGAGAGAGCGACCGCTAG
ACAGACCACAATCCCCGAGAGTAGAGGAAGAGAATGTTCGAATTTCACAC
CGATCGATCCAACAGGCACAAGTGGCTGTCGATCCTGCACAAGCAACGCC
GACACCACTTTGCCCAACTCCTACTCCCGACTTCGATACCCCGCTTGTCT
GGCGTCCTTGACCGTTTCCACTCCCTTCCTCAAAGTGCTGCTGCACGCGG
AACACATCACGCTCCCCCGGCGCCTCCTTCGCCTCCCGCCGCGGTCCCTT
CTCCCGAGCGCCGGCGGCAGCGATGCTGCCACCTTTACCCTGAGGCTTTG
CGGTGTTTCGGCGGAAAGTGAAGGCATTCTCCTTGCACGAAAAGAGCTGG
TGAAGCCTCTGGTGGGGCTTTACTGTGATGCCGAGCTTTTGTTTCGGGAG
CAGAGACCAGCGGCTTCTCCGAGCGCAACTTCTGGGGTGGGCTTCGGCGT
CGGAGCGACCGAACAGGTGACTGGAGAGACACACCCTGTCCAGTCGATAC
GGACGCCGGAAGTAGCAGCTTGGTGGACGTTTGGTGGGTATCAATGCACA
CCTGCAGAGCTGGCTACCCGTTCACGCGGTCAGCGTCTCACCCGACGTTC
ATATTTACCACGTATCTAGTCTCTTGACCGGTTCACAGTCAGAGCCCCAG
CCACTACTGTGCTTCATATTATGATACTCTCGAATGCATTTTGAGTTGGT
TTTGTGCTTGCCCCGATGGAAAAATTCTGCTGCCGTGGGTCTGTCGCATG
CTGCGACGTTTGTTTACAAAAGAAGCCCGTTAGGCTTTTAAAACCCGTCC
GAACGCCTGAATTTCTGTTGATTTCATGCACGAGAATCCCGATGCTTCAA
CTTATTAGACATTACCCGGTGGTTCGAGGCCACCTCCTTATGTTGGACCC
GGAGACCTGGAATCGGAAGGCCAACGCATCGGCGCTCGTCCCACCTCCCC
CCGAGACCTGCCGCGTGGACCAGAATGTCCAGCACACACCCTGTGCCTTC
AAAAATCGAACCATTCCTTGCGCGATATTCGTGTTCAGGTTTCTGGGCAT
GTAGCCGTATGTCACATCCACCGACGGAGGGGCGTGCTCTGGCGGGACAT
GCTTCAGTCTCGAATCGACCCGAGGGCGGGGTTCGGAGAGTACCTCATTT
CCCAGGGCCTCGCGAGACTGCGCGAGGAACAGTGGTGGGCTACAGCGGAC
CGCAACGGCCTGAACCCTTCCTCGGCAGCAGTAGCAGCAGCATCAAGACC
AAAGTCTGCCGTGAGCACTCAAACGCATCGCCATCGGACCGGCGCTGCAA
GCACGGGTGAGAGCGGGGACGATTCCGAGCAGCCTTTCCCCGCACTCAAA
CGCCTCCTGGAGGACCGCGAGATATTCGTTGCGGCTGAGGGAGACGCAAA
GCGGGCGAGTAGAGGGCTTTGGAATTTGCCGCAGCGTGGGGAAGAGGGCG
GTGGAAGAGACAGCGCAGCGGTGGGCAGGGCGAAGAGTTTAATCGATGGG
GTGGCGGGCATTGCACGCGCATTAACGGGTTTGTTTGGCCGGTGGCGATG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig930:888..5288+

>mRNA_Ecto-sp13_S_contig930.20892.1 ID=mRNA_Ecto-sp13_S_contig930.20892.1|Name=mRNA_Ecto-sp13_S_contig930.20892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig930:888..5288+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAACGGCGCGCAAGACAACCATACGCGGGAAAATGGAAAAAGTGG
CGGCGAAATGGGCGCCAAGGCAACGGCGACAGCAGCAGGGGGGGCGCCCT
TGCGGGCTTCGCGCAAAACCGAGGGAGTGCTTGCCGCGATATCCATCAAG
ATTAACGACAACCTCGGGTTATTCCGGGCTGGCACGGCAACTATGATGGT
GGGTTCGGCGCTGGCCGTCTCTTTTCTCGTCTACCGCCGGGGTGTGCACG
GATTTCGTTCGGCCGCTCAGGTGCCCGCGTCGTATTTCGAACGCCGAAAA
AGGGTGCGTGTCCGCATAGCGAAGATTTCCGAAGCACCTGCAGCGCCTCC
AACCTTCGACAGTCCTCCGCAAGACGGCCGTGGTCGCTTCGACGCTGCCG
GAGTAGAAATCATCACGGCCAGACCCAAGGGTTCAGACGTGCTGCTGCAC
GCGGAACACATCACGCTCCCCCGGCGCCTCCTTCGCCTCCCGCCGCGGTC
CCTTCTCCCGAGCGCCGGCGGCAGCGATGCTGCCACCTTTACCCTGAGGC
TTTGCGGTGTTTCGGCGGAAAGTGAAGGCATTCTCCTTGCACGAAAAGAG
CTGGTGAAGCCTCTGGTGGGGCTTTACTGTGATGCCGAGCTTTTGTTTCG
GGAGCAGAGACCAGCGGCTTCTCCGAGCGCAACTTCTGGGGTGGGCTTCG
GCGTCGGAGCGACCGAACAGGTTTCTGGGCATGTAGCCGTATGTCACATC
CACCGACGGAGGGGCGTGCTCTGGCGGGACATGCTTCAGTCTCGAATCGA
CCCGAGGGCGGGGTTCGGAGAGTACCTCATTTCCCAGGGCCTCGCGAGAC
TGCGCGAGGAACAGTGGTGGGCTACAGCGGACCGCAACGGCCTGAACCCT
TCCTCGGCAGCAGTAGCAGCAGCATCAAGACCAAAGTCTGCCGTGAGCAC
TCAAACGCATCGCCATCGGACCGGCGCTGCAAGCACGGGTGAGAGCGGGG
ACGATTCCGAGCAGCCTTTCCCCGCACTCAAACGCCTCCTGGAGGACCGC
GAGATATTCGTTGCGGCTGAGGGAGACGCAAAGCGGGCGAGTAGAGGGCT
TTGGAATTTGCCGCAGCGTGGGGAAGAGGGCGGTGGAAGAGACAGCGCAG
CGGTGGGCAGGGCGAAGAGTTTAATCGATGGGGTGGCGGGCATTGCACGC
GCATTAACGGGTTTGTTTGGCCGGTGGCGATGA
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