mRNA_Ecto-sp13_S_contig93.20889.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93.20889.1
Unique NamemRNA_Ecto-sp13_S_contig93.20889.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: A0A6H5L640_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L640_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 2.140e-156
Identity = 272/317 (85.80%), Postives = 280/317 (88.33%), Query Frame = 2
Query: 1529 KKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVGNGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQXXXXXXXXXXXXEERPSKRSRPPAAPNSTPRSESPIMEEDLSRVLDGPSSNRVA 2479
            KKTT TKPRQTP VAAGVPQGETRAP SVDKTGA+ AWQSRK K DG STDGGDKNSS    RGSNGG+DNRGEA K NATREDLPTTVSVETTVS LPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAA SGG RRPRAPSRRALEASGQLKHDGAQWMTRERKAEEAR KAELREQRRQYKAAG KSGVVLEAFVA+AAGTGTVGDGVG GVAG++GVGSA TKHGRDPAWQKVSP++LAAS EQEQ            E+RPSKR RPPAAPNSTPRSESP M EDLS VLDGPSSNRVA
Sbjct:    7 KKTTDTKPRQTPAVAAGVPQGETRAPSSVDKTGANNAWQSRKAKNDGYSTDGGDKNSSSKKRRGSNGGKDNRGEASKGNATREDLPTTVSVETTVSSLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAXSGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARIKAELREQRRQYKAAGFKSGVVLEAFVAKAAGTGTVGDGVGGGVAGKIGVGSATTKHGRDPAWQKVSPEMLAASAEQEQATEKEELLSASAEKRPSKRPRPPAAPNSTPRSESPNMVEDLSGVLDGPSSNRVA 323          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 7.460e-154
Identity = 272/318 (85.53%), Postives = 277/318 (87.11%), Query Frame = 2
Query: 1526 SKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVGNGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQXXXXXXXXXXXXEERPSKRSRPPAAPNSTPRSESPIMEEDLSRVLDGPSSNRVA 2479
            SKKTTGT PRQ PTVAAGVPQGE RAP +VDKTGA+KAWQ RK  KD DSTDGGDKNSS    RGSNGG+DNRGE  K NATREDLPTTVSVETTVS L SPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQARE AKKEAAASGG RRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGT GDGVG GVAGELGVGSA TKHGRDPAWQKVSP +LAASPEQEQ            E RPSKR RPPAAPNSTPRSESP M EDLS +LDGPSSN VA
Sbjct:   56 SKKTTGTTPRQAPTVAAGVPQGEARAPSNVDKTGANKAWQGRKATKDRDSTDGGDKNSSSKKRRGSNGGKDNRGEVSKVNATREDLPTTVSVETTVSSLRSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREVAKKEAAASGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTAGDGVGGGVAGELGVGSATTKHGRDPAWQKVSPGILAASPEQEQATEQEETLSPSSE-RPSKRPRPPAAPNSTPRSESPNMVEDLSGILDGPSSNGVA 372          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: A0A6H5LLY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLY6_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 6.440e-108
Identity = 276/675 (40.89%), Postives = 350/675 (51.85%), Query Frame = 2
Query:  404 MGGNPMASASPFKVDQMAPSFHPSQREAPAARXXXXXXXXXXXSLRVAPCSGQDLGQAQEGAIPSTAGQPGRQTCEHTDGKRAAGTVEDPDLYPLWPTPAGSAVAEKAPCKSWSAAPQPGAVGSPLVSPCPTSSALAATPAAKALVARTPVGCQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKPSDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQG---------------ETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVGNGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQXXXXXXXXXXXXEERPSKRSRP 2383
            M  N   S +     +  P ++    + P+ R             R AP SGQD   AQ      ++  P            A G  E P  YPL P P   AV ++A     S+A  PG  G P++S  P+SSA  + P AK L    PV CQ+ GC   A+YGP D PP  CQ HKR GQ+TTNRHG L++ATR+G+AFR  A  T A SP P + N G    SDQS LPS   S  PSSS  PK                    P K SG                        +RPG+S G N   QS +   CLFPGC ARP +GLPGA RAVYC SHKKG MV L++++P + ++A             K TTG    Q PT ++                    + RAP ++D+ GA  A + R+  ++ ++ DG   + S    + S+GG+D RG       T E+L T  + +   S LPSP  AA  KP S P NR  D++GMAPSVEF +LRQARE AK EA ASG  RRPRAPSRRALEA+G+LK  GAQWM+RE+KAE+ R KAELR QR++Y+AAGLKSGVVLE FV  A GT   GDG+        G G A T  G +P WQKVSP+ L+A+  ++              ++PSK+ RP
Sbjct:    1 MDDNVATSTAQATDKKKLPVYNHRTNDDPSTRSASLSSASSCSCSRAAPYSGQDQFDAQPANSSVSSNGPALHAINAPGQAAATGAKEGPGPYPLRPRPTHGAVVKQALSVLKSSASHPGRAGMPVLSASPSSSAHTSVPPAKELP--IPVRCQHRGCSNLARYGPLDSPPCTCQLHKRVGQFTTNRHGALFRATREGNAFRKLAAAT-AKSPPPCSINKGNLAASDQSRLPSTGSSGAPSSSSHPK--------------------PGKTSGTRG---------------QVLKRANRPGLSGGNNRESQSSRDSACLFPGCDARPDYGLPGATRAVYCFSHKKGPMVQLFKETPALPDSA------------GKATTGKPRSQVPTESSXXXXXXXXXXXXXXXXXGAKKKRAPRNIDRNGAKNARRGRQETEEDNNADGSGTHKSE---KRSSGGKDERGAISSSTVTGENL-TKTTAKPAASSLPSPAPAAEPKPPSFPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRLQRKRYQAAGLKSGVVLEMFVPAATGTEAAGDGIEERDGEVRGEGGATTPIGSNPGWQKVSPETLSAASPKQHSTGQRRESSVGTGQKPSKQVRP 621          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: A0A6H5L360_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L360_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 9.520e-106
Identity = 275/658 (41.79%), Postives = 347/658 (52.74%), Query Frame = 2
Query:  458 PSFHPSQREAPAARXXXXXXXXXXXSLRVAPCSGQDLGQAQEGAIPSTAGQPGRQTCEHTDGKRAAGTVEDPDLYPLWPTPAGSAVAEKAPCKSWSAAPQP----------GAVGSPLVSPCPTSSALAATPAAKALVARTPVGCQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKPSDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVGNGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQXXXXXXXXXXXXEERPSKRSRPPAAPNS 2401
            P ++    + P+ R           S RV P SGQD   AQ      ++  P            AAGT E    YPL P P   AV ++A     S+A QP          G  G  ++S  P+S A  A P AK      P+ CQ+ GC   A+YGP D PPRACQ HKR GQ+TTNRHG L++ATR+G+AFR  A  T   SP P + N G  + SDQS LPS   S   SSS  PK             P + SG   +                           +R GIS G N G QS + R CLFPGC ARP +GLPGA RA+YC +HKK  MV L+++ P + N A   G+ T G    K++ G            V   +TRAP ++D+ GA KA +  +  ++ +  D G K++S    R S GG+D RG       T E+L T  +V+T+ S LP P  A    P SS  NR  D++GMAPSVEF +LRQAREAAK EA ASG  RRPRAPSRRALEA+G+LK  GAQWM+RE+KAE+ R KAELR QR+QY+AAGLKSGVVLE FV  A GT   GDG+        G G A T  G +P W KVSP+ L+A   ++              ++PSK++R  A   S
Sbjct:   19 PVYNNRTNDVPSTRSSSSSPTSSCSSSRVTPYSGQDQLDAQLANSSVSSESPALHDLNTPGQAAAAGTKEGSGPYPLRPRPTHGAVVKQALSIFKSSASQPSXXXXXXXXXGGPGVRVLSTSPSSPAHTAVPPAKE--PPIPMHCQHRGCSNLARYGPLDSPPRACQLHKRVGQFTTNRHGALFRATREGNAFRKLAAATVK-SPPPCSINKGDLVASDQSRLPSTGSSGASSSSSHPK-------------PEETSGTRGQ----------------------VLKRANRQGISGGHNGGSQSSRNRTCLFPGCDARPDYGLPGATRAMYCFAHKKAPMVQLFKELPALPNKA---GNATTG----KRSQGPAAXXXXXXXXSVGANKTRAPSNIDRNGAKKARRGPQETEEDNDVDSGGKHTSKK--RRSTGGKDERGGISSAKVTGENL-TKPTVKTSASSLPPPAPAFEPNPPSSSNNRLADSSGMAPSVEFLVLRQAREAAKTEAEASGLGRRPRAPSRRALEAAGRLKGIGAQWMSREKKAEDLRLKAELRLQRKQYQAAGLKSGVVLEMFVPAATGTEAAGDGIEQRDGEVRGEGGATTPRGSNPGWHKVSPEALSAPSSKQHGSGQGKGSSVGRRQKPSKQARSTAVAES 628          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: D7G0V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V0_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.410e-76
Identity = 178/373 (47.72%), Postives = 228/373 (61.13%), Query Frame = 2
Query: 1295 SRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPT----VAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVGNGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQXXXXXXXXXXXXEERPSKRSRPPAAPNS 2401
            +RPG+S G N G QS + R CLFPGC ARP +GLPGA RAVYC SHKKG MV L++++P + +N            P K TTG    Q PT     AA V     RAP ++D+  A KA   R+ +++ +  +  D + +    + S+GG+D RG         E+L T  + +T+    PSP  AA   P SSP NR  D++GMAPSVEF +LRQARE AK EA ASG  RRPRAPSRRALEA+G+LK  GAQWM+RE+KAE+ R KAELR+QR+QY+AAGLKSGVVLE FV EA GT   GDG+        G G A T  G +P WQKVSP++L+A   ++              ++PSK++R  A   S
Sbjct:   33 NRPGLSGGHNGGSQSSRNRSCLFPGCDARPDYGLPGATRAVYCFSHKKGPMVQLFKETPALPDN------------PGKATTGKPRSQAPTEPAAAAASVGTKNPRAPSNIDRNAAKKA---RRGQQETEEDNDADVSGTHRSKKRSSGGKDERGAISSSTVAGENL-TKTTAKTSAPSFPSPAPAAEANPPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRQQRKQYQAAGLKSGVVLEMFVPEATGTEAAGDGIEERDGEVRGEGGATTLRGSNPGWQKVSPEVLSAPSSKQHGTGQREETSVGRGQKPSKQARSTAVAES 389          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.230e-68
Identity = 197/487 (40.45%), Postives = 251/487 (51.54%), Query Frame = 2
Query:  758 PGAVGSPLVSPCPTSSALAATPAAKALVARTPVGCQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKP-SDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCN-------ATREDLPTTVSVETTVSPLPSPTSAAATKP-----------LSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFV 2161
            PG   +  +SP PTS     T + K L A T   C+YPGC + AKYG +D PP  CQAHKRAGQYTTNRHG+L  ATRDGDAFRTPAV                        +P  A +V PS +          + + G +  S Q    S  S  SS                     SRPG S+ R++  ++ Q   CLFP C ARP +GLPGA RA YC SHKKG MV L+ ++P V+N+          V P+  T G + +Q          G T      D+ GA KA +   +K+D       +K ++     G  G +  R    K N       A+   + T  +  T+     SP +  + KP           +  P   S  + GMAPSVE  +LRQAREAAK EA ASG  RRPRAPSRRALEASG+L+ DGAQWMTRE+KAE+AR  +ELR++R++ + AGLK GVVLEAFV
Sbjct:   32 PGVSPASSMSPPPTS-----TSSPKTLQAPTAPRCEYPGCPKSAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFRTPAVA-----------------------VPVPAVTVPPSPA---------SSEIAGTEAASAQPRRRSTGSTGSSVPSHRKPKAKLSSSVHALKRKSRPGTSSSRHEESRAPQYHSCLFPECGARPIYGLPGAARAAYCFSHKKGSMVDLFSEAPAVNNHEAKR------VTPAAPTEGKRKKQKKGHEERKMTGMT-----ADQRGAKKARRESSIKED-------NKGATSKDDGGHRGAKKIRDNKTKVNGGMGASEASVGAIVTAAAAGTSEMSTKSPAAKPSVKPTRKVKEPADTIVPPPQPTSRPSDGMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKAEQARVNSELRKKRKESREAGLKVGVVLEAFV 463          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 3.490e-66
Identity = 194/489 (39.67%), Postives = 248/489 (50.72%), Query Frame = 2
Query:  758 PGAVGSPLVSPCPTSSALAATPAAKALVARTPVGCQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKP-SDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGD---STDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKP--------------LSSPP---NRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFV 2161
            PG   +  +SP PTS     T + K L+A     C+YPGC + AKYG +D PP  CQAHKRAGQYTTNRHG+L  ATRDGDAFRTPAV                        +P  A +V PS +          + + G++  S Q    S  S  S                      +RP  S+  ++   +LQ R CLFPGC ARPT+GLPGA RAVYC SHKKG MV+L+  +P V+NN     +  A     +K                         + D+ GA KA +   +K+D     S DGG         +G+    DN  +  +   T E     ++           T ++A KP              ++ PP   NR  +  GM+PSVE  +LRQAREAAKKEA ASGG RR RAPSRRALEASG+L+ DGAQWMTRE++AE+AR   ELRE+R++ + AGL  GVVLEAFV
Sbjct:   32 PGVSPTSSLSPPPTS-----TSSPKTLLAPKAPRCEYPGCPKYAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFRTPAVA-----------------------VPVLAVTVPPSPA---------SSEIAGMEAASAQPRRRSTGSSGSLVPSHRKPKAKLSSSVHTLKRKNRPEPSSSGHEESPALQNRSCLFPGCDARPTYGLPGAARAVYCFSHKKGSMVNLFSQAPAVNNNEEKRVTAVAPTEGKRKKX-----------XXXXXXXXXXSMTADQRGAKKARRESSIKEDNKGATSKDGG-------GYQGAKKIRDNEKKVNRGVGTSERSVGAIATAAAAGTSEMSTKSSAAKPPVKSTHIAKEPADTMALPPQPTNRPSE--GMSPSVEMLILRQAREAAKKEAEASGGGRRARAPSRRALEASGRLRGDGAQWMTREKRAEQARVNTELREKRKKSREAGLTVGVVLEAFV 463          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 6.550e-66
Identity = 191/455 (41.98%), Postives = 241/455 (52.97%), Query Frame = 2
Query:  860 CQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKPSDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDST----DGG--------DKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVS-PLPSPTSAA-----ATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEA 2170
            C+YPGC + AKYG ++ PP  CQAHKRAGQYTTNRHG+L  ATRDGDAFRTPAV                        +P  A +V PS    P + ++        +P  +S      S  SS                     +RPG S+ R++   + + R CLFPGC ARPTHGLPGA RAVYC SHKKG MV L+ ++  V+N+   +      V  +  T G K +QT         G T      D+ GA +A +   + +    T    DGG        D  +      G++GG            T E     +SV++  + PL   TS A      T P   P +R  D  GMAPSVE  +LRQAREAAK EA ASG  RRPRAPSRRALEASG+L+ DGAQWMTRE+KAE+AR  +ELR++R++ + AGLK GVVLEAFV  A
Sbjct:  115 CEYPGCPKSAKYGLREAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFRTPAVA-----------------------VPVPAVTVPPS----PASSEIAGTEAASARPRRRS----TGSSGSSVPSHRKPKENLSSSVHTLKRKNRPGTSSSRHEESPAPKNRSCLFPGCGARPTHGLPGAARAVYCFSHKKGSMVDLFSEALAVNNHEEKS------VTSAAPTEGKKKKQTQAKKEREMTGMT-----ADQRGAKQARRESSIMEGNKGTTSKDDGGHRGAKKIRDNETKVNRGMGASGGSVGAIATAAAAGTSE-----MSVKSPAAKPLVKSTSEAKEPADTTAPPPQPTSRPSD--GMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKAEQARVNSELRKKRKESREAGLKVGVVLEAFVPRA 520          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: D7G0U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.210e-64
Identity = 176/424 (41.51%), Postives = 222/424 (52.36%), Query Frame = 2
Query:  860 CQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKPSDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAA-----GVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQY 2116
            CQ+ GC   A+YGP D PPRACQ HKR GQ+TT+RHG L++ATR+G+AFR  A  T    P                                      PC+   G             SG SS                     S P        GR S  +      GC ARP +GLPGA RAVYC SHKKG MV L+++ P + N A  A S  A V+  K TTG K  Q P          V   +TRAP  +D+ G+ KA   R+ +++ +  +  D + +    +  +GG+D RG       T+E+L T  + +T+   LPSP  AA   P SSP NR  D++GMAPSVEF +LRQARE AK EA ASG  RRPRAPSRRALEA+G+LK  GAQWM+RE+KAE+ R KAELR+QR+QY
Sbjct:    3 CQHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGNAFRELAAATVKSPP--------------------------------------PCSIFKG------------SSGRSS-------------------SSSHP------MPGRTSATR------GCEARPDYGLPGATRAVYCFSHKKGPMVQLFKEPPSLPNKAGQAESAAAPVVTRKATTG-KRSQGPAXXXXXXXXSVGAKKTRAPSDIDRNGSKKA---RRGQQETEEDNDADVSGTHRSKKRRSGGKDERGAISSAQVTKENL-TKTTAKTSAPSLPSPAPAAEANPPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRVKAELRQQRKQY 340          
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Match: D8LH07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH07_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.210e-45
Identity = 160/412 (38.83%), Postives = 202/412 (49.03%), Query Frame = 2
Query:  983 ATRDGDAFRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPKMPCNTVPGLKP-SDQSGLPSKDSGNSSFXXXXXXXXXXXXXXXXXXXXSRPGISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVHLYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRAPFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSXXXXRGSNGGEDNRGEAPKCN-------ATREDLPTTVSVETT--------VSPLPSPTSAAA--TKPLSSPPN-RSGDTAGMAPSVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFV 2161
            ATRDGDAFRTPAV                        +P+    ++P+SS            + G +  S Q    S  S   S                     +RPG S+  ++   + Q R CLFPGC ARP +GLPGA  AVYC SHKKG MV+L+  +P V+N+          V P+  T G +             G T      D+ GA KA +   +K+D       +K ++     G  G + NRG   K N        +  D+ T  +  T+          PL   TS A      ++ PP   S  + GMAPSVE  +LRQAREAAK EA ASGG RR RAPSRRALEASGQLK DGAQWMTRE+KAE+AR   ELRE+R++ + AGLK GVVLEAFV
Sbjct:    2 ATRDGDAFRTPAVAVP---------------------VPAVTVPLSPASS-----------EIAGTEAASAQPRRRSTGSSGPSVPSQCKPKAKLSSSVHTLKRKNRPGTSSSGHEESPAPQNRPCLFPGCGARPIYGLPGAAHAVYCFSHKKGSMVNLFSRAPAVNNHEEKM------VTPAAPTEGKRKXXXXXXXXRKMTGMT-----ADQRGAKKARRESSIKED-------NKGATSKDDGGHRGAKKNRGNETKVNRGTGASEGSVGDVATAAAAGTSEMSTKLPAAKPLVKLTSKAEEPADTMAPPPQPTSRPSEGMAPSVEMLILRQAREAAKTEAEASGGGRRARAPSRRALEASGQLKGDGAQWMTREKKAEQARVNTELREKRKKSREAGLKVGVVLEAFV 363          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93.20889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L640_9PHAE2.140e-15685.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEM4_ECTSI7.460e-15485.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LLY6_9PHAE6.440e-10840.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L360_9PHAE9.520e-10641.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V0_ECTSI2.410e-7647.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYF0_9PHAE2.230e-6840.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGW8_ECTSI3.490e-6639.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLI4_9PHAE6.550e-6641.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0U7_ECTSI1.210e-6441.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH07_ECTSI1.210e-4538.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93contigEcto-sp13_S_contig93:25981..32784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3299
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002460.1
Cds size2079
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93.20889.1prot_Ecto-sp13_S_contig93.20889.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93 26384..31967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464199.2728088-UTR-Ecto-sp13_S_contig93:25980..263831681464199.2728088-UTR-Ecto-sp13_S_contig93:25980..26383Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig93 25981..26383 +
1681464199.3955615-UTR-Ecto-sp13_S_contig93:31967..327841681464199.3955615-UTR-Ecto-sp13_S_contig93:31967..32784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig93 31968..32784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464199.284248-CDS-Ecto-sp13_S_contig93:26383..266481681464199.284248-CDS-Ecto-sp13_S_contig93:26383..26648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 26384..26648 +
1681464199.2951043-CDS-Ecto-sp13_S_contig93:27054..272511681464199.2951043-CDS-Ecto-sp13_S_contig93:27054..27251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 27055..27251 +
1681464199.3103726-CDS-Ecto-sp13_S_contig93:27698..278341681464199.3103726-CDS-Ecto-sp13_S_contig93:27698..27834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 27699..27834 +
1681464199.329045-CDS-Ecto-sp13_S_contig93:28184..282591681464199.329045-CDS-Ecto-sp13_S_contig93:28184..28259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 28185..28259 +
1681464199.344481-CDS-Ecto-sp13_S_contig93:28636..287441681464199.344481-CDS-Ecto-sp13_S_contig93:28636..28744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 28637..28744 +
1681464199.354353-CDS-Ecto-sp13_S_contig93:29554..296591681464199.354353-CDS-Ecto-sp13_S_contig93:29554..29659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 29555..29659 +
1681464199.3642483-CDS-Ecto-sp13_S_contig93:30026..301051681464199.3642483-CDS-Ecto-sp13_S_contig93:30026..30105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 30027..30105 +
1681464199.3739114-CDS-Ecto-sp13_S_contig93:30513..306721681464199.3739114-CDS-Ecto-sp13_S_contig93:30513..30672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 30514..30672 +
1681464199.3854058-CDS-Ecto-sp13_S_contig93:31012..319671681464199.3854058-CDS-Ecto-sp13_S_contig93:31012..31967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 31013..31967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93.20889.1

>prot_Ecto-sp13_S_contig93.20889.1 ID=prot_Ecto-sp13_S_contig93.20889.1|Name=mRNA_Ecto-sp13_S_contig93.20889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=693bp
MGGNPMASASPFKVDQMAPSFHPSQREAPAARPSSPPSSSPSSSLRVAPC
SGQDLGQAQEGAIPSTAGQPGRQTCEHTDGKRAAGTVEDPDLYPLWPTPA
GSAVAEKAPCKSWSAAPQPGAVGSPLVSPCPTSSALAATPAAKALVARTP
VGCQYPGCERKAKYGPKDEPPRACQAHKRAGQYTTNRHGDLYKATRDGDA
FRTPAVVTTAGSPRPRTGNTGKYLTSDQSGLPSKAYSVNPSSSPLPKAPK
MPCNTVPGLKPSDQSGLPSKDSGNSSFTPRPEAAENPSNEVAVLKRTSRP
GISTGRNDGRQSLQKRDCLFPGCRARPTHGLPGAVRAVYCGSHKKGVMVH
LYEDSPDVSNNATAAGSTTAGVIPSKKTTGTKPRQTPTVAAGVPQGETRA
PFSVDKTGASKAWQSRKVKKDGDSTDGGDKNSSSKKRRGSNGGEDNRGEA
PKCNATREDLPTTVSVETTVSPLPSPTSAAATKPLSSPPNRSGDTAGMAP
SVEFHLLRQAREAAKKEAAASGGRRRPRAPSRRALEASGQLKHDGAQWMT
RERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTVGDGVG
NGVAGELGVGSAPTKHGRDPAWQKVSPKLLAASPEQEQATKQEEQLSASA
EERPSKRSRPPAAPNSTPRSESPIMEEDLSRVLDGPSSNRVA*
back to top

mRNA from alignment at Ecto-sp13_S_contig93:25981..32784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93.20889.1 ID=mRNA_Ecto-sp13_S_contig93.20889.1|Name=mRNA_Ecto-sp13_S_contig93.20889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:25981..32784+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCTACAATGATCTGCAGTTTTTAGAGGCACCATGCAAGTGCGGGGTTT GGCGGTTTGGCGGTTATAACTGCATGGTGCTGGTACCCAGGTCGAACGTC AATCCCGAGCCGTTGGACGTTGTTGAGGGCGCGTTCGACGACCCGGGTCT GACATTAATGATGTCGTGCGAGTCGCGAAACACGTGAATATCACTTGATG TTGCCCAACGCCAGTCTGATTTTAGATGAAACACAGTCGAACAACCTGCA GCAACAGGCTGGGCAATCATCGTAGCGACCGTATTTTCACAACCACATGT GTATACCTTCTCAACCCCCTCGTCAACATGACGCAATTCCACAAAACGGA TATGTACCTACAGTGCGTAGTGCAATCCCCGAACTCTTTGCTTCCAGGTA TCCATGGGAGGGAACCCAATGGCATCCGCTAGTCCCTTTAAAGTCGACCA AATGGCCCCCAGCTTTCACCCCAGCCAGCGTGAAGCCCCCGCGGCACGAC CTTCATCACCGCCATCGTCGTCGCCGTCCTCATCGTTGCGTGTGGCACCC TGCTCTGGTCAAGATTTGGGTCAAGCACAGGAGGGGGCGATCCCGTCGAC TGCAGGGCAACCAGGGCGCCAGACTTGCGAACATACCGACGGGAAACGTG CAGCGGGCACCGTAGAAGGTTCGAGGCTATGTCAAGACACATCATGCGAG AGGCAGCTACAATCACCACACGATATGCTTTCGGATCCCTCCCGCATTGA ACCCCTGCACCGCGCTCAACTTCGAGGTTTTTAGAAGTTTCGCACGGTAC ATCAATCATCCTGAGATGCATGAAGTGAATGTTCAAGATGGGTTCCCTTG GCGGACTTGATACCGTGAGCCATACAAACCAACCGGCACTTGAGGCATAC GCACGGCCAATAACAGCTTTCATACGTTGGTGGTACTCAGCCTGGCTCCT CACCCCCCATGGGTAGACAAGTCCGTTTCTTGCTGAGCCATGACCGAAGA AAACTGCCCAAACTGGTTTCAACCTCGTGTTCTGATTCGAAATAGTTTTC TGTTGACCCCTGTTTTGTGTGCAGATCCCGACCTCTACCCACTGTGGCCA ACGCCCGCCGGCAGCGCGGTAGCGGAAAAAGCACCCTGCAAGTCTTGGTC TGCAGCACCACAGCCCGGCGCTGTCGGCTCGCCCTTGGTATCGCCATGCC CGACATCTTCAGCTCTTGCTGCCACCCCTGCTGCGAAGGCGTTGGTCGCC CGAACGCCAGTAGGCTGTCAGGTGCACACAGACCGCAGTGACCGTTCCGA AATTTTATCGTGGCTGACTTGTCCATGTTGATATTGTGCGGTGCTACCAA CCCTCTCAACCCAGTTGTTGAGAATGTCCCGTCTTCAAGGTAAGATACGT TTGAAGTTGGCAAATCCCGCCCTTCGAACAACTCCAGTGGATCCCACGCA AACAACAACGCTGGCTGGTTTTAATGAAGTAGGCTCGACGAGGTATGTGT CGGTGGAAGGCGGCCATGGGCCCCGGGCACTGCTTCTTTCTACATGATTA TGGTGTTGCAGTCAAAGTGTGTTGGATTTCCTTGGAGTCCCGGTTTGGCA TTCTGATATTTGCCTTATAGTTGCCCCTTTTAGGTGATCTGGAACGTCTT GTGTTCGAGGCGACTTTATGACGGCATGCACATATCACCTTTATTGTGCT CGTTGTTCGAACACACAGTACCCGGGGTGCGAAAGAAAAGCAAAATACGG CCCCAAAGATGAGCCACCTAGAGCATGCCAGGCGCACAAGAGGGCTGGCC AGTACACCACCAACCGACATGGAGACCTGTATAAAGCTACCCGTGATGGT GACGGTAAGATGCGGCATTTGCACTCTTTGGTGTTGGTGTGTCCGTCCGT CAACGCGAAAGCTTCCTAGTCGAGCATGGAAGGATCAGACAAAGGCTCCA TTTTTCACACCGGTGCAGCTTGGTCCTGGCCTTGGTTGTTTCTTGCGCCG ACCCTTTCAGACTTGTACTGCTCGGCGCTGCTGTTGGCCGTCATGGTCGC ACCTACCGCAATACGCTCACATCCCAATCTAAGGCGTATCCGCGACCCGC CCCTCGTCACGCCAAAGAGACCGGGCATGTTTTGAAAAATTTCGCGCATC CTAGAACATGTGCCCCTCTCTGAACGTTTCGGTGGTTTATTCGTCACGAT CTAGCCTTCAGAACACCTGCGGTGGTGACTACAGCCGGCTCCCCCCGACC AAGAACAGGCAACACAGGCAAGTACCTGAGTGCGTGCCTTGTACATCAAG GTCGGCGGTTGCGCGTCGCTTCCTTTTTCAGATGCATACACAATTTCAAC ATGCCTGCACCTGTTCGCACTTTGTGTGTGATATTTTGCTCCATTGCTTC GGTCCACGCCCTGCCTTTCGTTCCTTTCCGGGGCAATGGTCTCGCTGACA TGTTATACGATTGTTGTCGATGGGAGGGAAGGATACAGCTGAGGGTTTGA CATGTGTGTTGTGCTGTGAACCCTCGCACTACGATACTCAGCCGTCTCAC CCCTTCCGGGCTCAACAATAGCACTCAGTTGACACATCGACCACACGACT GACTTACTTGTTCACGTTTGTTTGCGACTTGCCGTCCGTCGTGCGTGCAT CGGCAGCGTCTGACCAATCCGGGCTGCCATCGAAAGCTTATAGCGTTAAC CCGTCTTCCTCACCTCTCCCGAAGGCGCCCAAGATGCCTTGCAATACGGT GCCGGGGCTGAAACGTGAGAGGGAAAATAGAGCAGTGAAAGGGAAGGGGG AACTTTCCAGACGTGTTTGTGTTGTCCCTCCAGATGTTTTCGCTCGACAT GTGCGACGGTTGTAGATGCCTCTCACAGCCCCGTAGACCCTTGTTTTGCG GCTTTGTACTGTTCCGAAGTGCATCGGGCTCCCAACGTCGTTCACTCGTT TCTGGCCCGTATGGGTTAAGTGCGAAACATCGGATAGCTATATTCAGCCG TCTTACTGCCTCCAAGCCCAAGAACTCAGTTGACCTAGGACAACCGCACG GCTGACCTACTTCGTTGCGGTTGTGCGCGAATACCCGCCCATCGTCCATT CGTTGGCAGCGTCTGGCAAATCCGGGCTGCCGTCGAAAGCTTGTAGCGTC AGCTCCTTTTCTTCCCCCCTCTCGAAGGCAGCCAAAACACCTCCCAAATC GGTGGCGGTGCTAAAACGTGAAATGACGGAGAGGGTTGTGCAAGGGAAAA GGGCAAGTGCAGATGAATTTGTTCTATCACTCAGATCTCTTGGCTCGGCG TATGGGACTTTTGTCGATGCCTCCCACAGCCGCGTACGTAGACGCTTGAT AGCGCTGCTGCTTGTTGTTCGGAGTGCATAGGGCTCCCAATTTCGTCCAC CTGTTTCGGGCTTCTACGGATTCAGCACGAACGTTAGCATTGCGATACTC AGCCACCATTTCTTTCAGGCCCAACAACAGCACTCAGTTGGCCCAGGACA GCCACGTAACTGACCTGTTTCTCCACGTTTGTGCGCGTCTGACCAATCCA TCGTATGTATACGTGCGTCGGCAGCATCTGACCAATCCGGACTGCCGTCG AAAGATAGCGGCAATTCATCTTTCACCCCCCGCCCGGAGGCAGCTGAGAA CCCTTCCAATGAGGTGGCGGTGCTGAAACGTGAGCTGACGGAGAGAGTTG TGGAAGAGAAGGGGGCATGTTCCATTGGCATTTGTGTTGTCCCCAAGATA TGTTCGTTCGGCATATGCGACTTTTTTCGATGCCTCCCATAACCCCGTAG ACGTGACACCGCTGCTGCCTGCTGTGCTGAGTTACAGAGGGCTCCCAATG CCATTAGCTTCTCTTTGTCTTGTTCGAATTGATTTAGTGTGCCTGCAATC AAGTTTTTTCCGGCCTGTTCTTGTTGCTTCGTTTCACCGGCGGCTGGATC CATGATAACGAACTACCCAATCCCCACATCGGTTTACTCCAGATGACACA GTTAGGCTGCGCGTGTCAACCCTGCTTGTACAATTTGTGTTCCCAGGCAC GAGCCGGCCAGGAATCTCCACAGGGCGCAACGATGGGAGGCAGTCATTGC AGAAACGCGATTGCCTATTTCCAGGGTGAGAGGAGCCCAAATCGAAACCG CGCATTCAACGATCGAAACTGAACAAGTACTGTTTAGCCGTGATACTGCC GCATTGTTAAGGGCGAAGAGTCATTTATTGAGAACTATGGACTTGCACTG CCGCAGCGGTCCTGTACCCTCGTGTTTTTTCAGTATCTGGATCACACAAT TGTGAGCTAGTGTATTCTTGCGTGCGGAGGTTCCTGCAAGCAATCATATA TTCAGATCGATACCCACCAAATCCATTTTACGCCGAAACGGCACCCTATT ATGCGCCTTGGTTCATTTTTTTTGCCGGCGGAAATCTGTAATGATGTGGA ACAGCAGCATCCGTGACGAGCGCTCCAGTCAAATTTTCGGCGAAAACCAA CTATTGCTTTTTCGCCCCGCCCCGTCCTGTCAGATGTAGAGCTCGACCCA CCCATGGTCTACCTGGTGCGGTACGCGCCGTGTATTGCGGCTCTCACAAG AAGGGTGTCATGGTGCATCTCTACGAAGATTCGCCGGACGTCTCAAACAA CGCTACGGCTGCTGGAAGCACTACTGCGGGAGTTATCCCAAGGTCGTTTT CGGTTCTTGTTCTGTTCATAGTCGCGGCGCCGGTCTTACGCATTAAGGCT TATTGGCATCCCTTCCCGTTTTGGTCACGTGACAGCAATGTGCGCTCTTC GTATTGCAAACTTCACAACAACTACGCCGGAAGCGTCCCCCGTCGTTTCC TTGTTACTGTTTACCCTTCGGTGGATACAGTTCGGAGGGAATATCTTCCA TTTGTTATCCAAAACGAGACACGCCGTAAAGTCGTGATAGAATCGTCCGT GGCCCAGGCGCTCGCGATAGACGATTAGCGTCTCAACAGGTTTCTACGCC CTTCCATTGCTTCCTGCTTCGCGTCGTTGCAGCAAGAAGACCACCGGCAC GAAACCACGCCAGACTCCTACCGTGGCAGCAGGAGTACCCCAAGGAGAGA CTCGAGCGCCTTTCAGCGTAGACAAGACCGGCGCTAGCAAAGCGTGGCAA AGCCGAAAGGTCAAGAAAGATGGTGATTCCACCGACGGCGGAGACAAGAA CAGCAGCAGCAAGAAGCGCCGTGGAAGCAATGGTGGCGAGGACAATCGAG GAGAGGCTCCCAAGTGCAATGCAACCAGAGAGGATCTACCGACAACGGTC TCTGTCGAGACTACTGTCTCACCCCTGCCGTCACCAACCTCAGCAGCCGC CACCAAACCCCTGTCCTCTCCGCCCAACCGGTCGGGCGACACGGCTGGCA TGGCCCCGTCCGTTGAGTTCCATCTCTTAAGGCAGGCCAGGGAAGCAGCC AAGAAGGAAGCCGCGGCAAGCGGCGGAAGGAGGAGACCCCGAGCTCCGTC CCGCCGGGCCCTGGAGGCATCGGGGCAGCTGAAGCACGACGGTGCTCAAT GGATGACGCGGGAGAGAAAAGCGGAAGAAGCTAGGTTCAAAGCTGAGCTA AGAGAGCAGAGAAGGCAGTACAAGGCGGCGGGCCTCAAGTCTGGAGTTGT TCTGGAGGCGTTCGTGGCGGAGGCGGCGGGGACCGGGACAGTGGGCGACG GCGTCGGTAACGGCGTTGCAGGAGAACTTGGAGTAGGGTCGGCACCAACA AAGCACGGTCGTGATCCCGCTTGGCAGAAGGTGTCACCGAAATTGCTCGC GGCCTCTCCGGAACAGGAGCAGGCCACGAAGCAGGAGGAACAGCTTTCAG CATCGGCAGAAGAGAGGCCTTCAAAGCGATCCAGGCCACCCGCAGCGCCC AACAGCACACCTCGCTCCGAGTCCCCGATTATGGAGGAGGACTTGTCGCG TGTTCTGGACGGTCCTTCGTCCAACAGGGTGGCGTGACGTGGTGGTGTTG CTGTTGTCGCTGGCATCAACGCTCAAGCGGCGAAGACCAGCACTGAGTAG GCTTCCAGAATTCTCGAGCCACGGTACAATCAATCATGGCAGGGAGACGA GGACCGAAATGAGAGAAAAAAATGGTAGCGTATGAAATAACCGCAATCTA CTGCGACACAAGGAATGGGAGCTGAAGGGACCTGAAGTTGTACAGCTTCA GAGTCAACAGCGATGGTAAAGTTAACGGTAGAGAAGAACTCCAGTGATGC ATGTAGCAGGCATCAGATCCTAGTGGCTTTTTGCGGGAGTTTTTTCGACG TTTTACAGTTGTACCCGGTGAAGTACTCAGTTTTGGTTGCGCGGTGATCG AGAGGCTTCACTGCCGGCTTCCTTGCACAATATGAGGCTTGTTTTGTGCA ATTAAAGTTCTCCCCCGAGTTGTTTTTGTCGACGTCGTCTAAGGGGTATG CATTTGGCAGAACATAAAAGAGCGAGTTATTTCAGGCGTATGAAAAGGGG GGCATATGGTTCAATGACGGAAGGTCAGGGTGTGGTTTTGACGACAGCCG CGTGGTGCGGTCTGCTGCTTCAACAACAACGGAATGACGACTATGTTTGG TTGAAGGTGCCGACTGTAGCGTGCGGAAATGATTATTGTGGTCGGAGACC GCGTGACCACATCCGAAGTCACGGCGGTAATCCGGAGAGGGTTCCAAACA TGGTATTCTAGCTCTTAAAGTAATGCCGTGTTCTCAGTAGACACGCCTTT TCCGGGATACATAAATCATACCTTTGAAGTACGTGGAGTGACTAATCATG ATTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93:25981..32784+

>mRNA_Ecto-sp13_S_contig93.20889.1 ID=mRNA_Ecto-sp13_S_contig93.20889.1|Name=mRNA_Ecto-sp13_S_contig93.20889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:25981..32784+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGGAACCCAATGGCATCCGCTAGTCCCTTTAAAGTCGACCAAAT
GGCCCCCAGCTTTCACCCCAGCCAGCGTGAAGCCCCCGCGGCACGACCTT
CATCACCGCCATCGTCGTCGCCGTCCTCATCGTTGCGTGTGGCACCCTGC
TCTGGTCAAGATTTGGGTCAAGCACAGGAGGGGGCGATCCCGTCGACTGC
AGGGCAACCAGGGCGCCAGACTTGCGAACATACCGACGGGAAACGTGCAG
CGGGCACCGTAGAAGATCCCGACCTCTACCCACTGTGGCCAACGCCCGCC
GGCAGCGCGGTAGCGGAAAAAGCACCCTGCAAGTCTTGGTCTGCAGCACC
ACAGCCCGGCGCTGTCGGCTCGCCCTTGGTATCGCCATGCCCGACATCTT
CAGCTCTTGCTGCCACCCCTGCTGCGAAGGCGTTGGTCGCCCGAACGCCA
GTAGGCTGTCAGTACCCGGGGTGCGAAAGAAAAGCAAAATACGGCCCCAA
AGATGAGCCACCTAGAGCATGCCAGGCGCACAAGAGGGCTGGCCAGTACA
CCACCAACCGACATGGAGACCTGTATAAAGCTACCCGTGATGGTGACGCC
TTCAGAACACCTGCGGTGGTGACTACAGCCGGCTCCCCCCGACCAAGAAC
AGGCAACACAGGCAAGTACCTGACGTCTGACCAATCCGGGCTGCCATCGA
AAGCTTATAGCGTTAACCCGTCTTCCTCACCTCTCCCGAAGGCGCCCAAG
ATGCCTTGCAATACGGTGCCGGGGCTGAAACCATCTGACCAATCCGGACT
GCCGTCGAAAGATAGCGGCAATTCATCTTTCACCCCCCGCCCGGAGGCAG
CTGAGAACCCTTCCAATGAGGTGGCGGTGCTGAAACGCACGAGCCGGCCA
GGAATCTCCACAGGGCGCAACGATGGGAGGCAGTCATTGCAGAAACGCGA
TTGCCTATTTCCAGGATGTAGAGCTCGACCCACCCATGGTCTACCTGGTG
CGGTACGCGCCGTGTATTGCGGCTCTCACAAGAAGGGTGTCATGGTGCAT
CTCTACGAAGATTCGCCGGACGTCTCAAACAACGCTACGGCTGCTGGAAG
CACTACTGCGGGAGTTATCCCAAGCAAGAAGACCACCGGCACGAAACCAC
GCCAGACTCCTACCGTGGCAGCAGGAGTACCCCAAGGAGAGACTCGAGCG
CCTTTCAGCGTAGACAAGACCGGCGCTAGCAAAGCGTGGCAAAGCCGAAA
GGTCAAGAAAGATGGTGATTCCACCGACGGCGGAGACAAGAACAGCAGCA
GCAAGAAGCGCCGTGGAAGCAATGGTGGCGAGGACAATCGAGGAGAGGCT
CCCAAGTGCAATGCAACCAGAGAGGATCTACCGACAACGGTCTCTGTCGA
GACTACTGTCTCACCCCTGCCGTCACCAACCTCAGCAGCCGCCACCAAAC
CCCTGTCCTCTCCGCCCAACCGGTCGGGCGACACGGCTGGCATGGCCCCG
TCCGTTGAGTTCCATCTCTTAAGGCAGGCCAGGGAAGCAGCCAAGAAGGA
AGCCGCGGCAAGCGGCGGAAGGAGGAGACCCCGAGCTCCGTCCCGCCGGG
CCCTGGAGGCATCGGGGCAGCTGAAGCACGACGGTGCTCAATGGATGACG
CGGGAGAGAAAAGCGGAAGAAGCTAGGTTCAAAGCTGAGCTAAGAGAGCA
GAGAAGGCAGTACAAGGCGGCGGGCCTCAAGTCTGGAGTTGTTCTGGAGG
CGTTCGTGGCGGAGGCGGCGGGGACCGGGACAGTGGGCGACGGCGTCGGT
AACGGCGTTGCAGGAGAACTTGGAGTAGGGTCGGCACCAACAAAGCACGG
TCGTGATCCCGCTTGGCAGAAGGTGTCACCGAAATTGCTCGCGGCCTCTC
CGGAACAGGAGCAGGCCACGAAGCAGGAGGAACAGCTTTCAGCATCGGCA
GAAGAGAGGCCTTCAAAGCGATCCAGGCCACCCGCAGCGCCCAACAGCAC
ACCTCGCTCCGAGTCCCCGATTATGGAGGAGGACTTGTCGCGTGTTCTGG
ACGGTCCTTCGTCCAACAGGGTGGCGTGA
back to top