mRNA_Ecto-sp13_S_contig93.20887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93.20887.1
Unique NamemRNA_Ecto-sp13_S_contig93.20887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig93.20887.1 vs. uniprot
Match: A0A6H5KS46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS46_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 1.310e-130
Identity = 254/332 (76.51%), Postives = 260/332 (78.31%), Query Frame = 1 
Query:    1 MPVDQDASEVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAL-HTSIANGREEVAFVLLSGDHQPASSNIXXXXXXXXXXXXXXXXXXXX----WAVEMLLRLGANRGAINDRGERPVQVARHNTVCAMLGPSTGSPNQDEESTAGFASSFEEGEGDVLRNVPTNANFDHRTIGGGNGRENADPGAGFVEGVGRRSFYETQSSTAKNRRVHSVLSQMEKSTLPSVEQESGKIGDNEQFDRFLNGSLVSSHVSTETEVGFAFLQKRGSDSSFEEASSEGELSLDSRMAQ-YPAEEII 978
            MPV QDAS VGLLLAARSGD+E VRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXX        WTA  H      RE      L    Q +S++I                        WAVE LLRLGANRGAINDRGERPV+VARHNTV AMLGPSTGSPNQDEE   GFASSFEEGEGDV RN+PTN  F HRTIGGGNGRENADPGAG VEGV RRSFYET SS AKNRRVH VLSQMEKSTLPSVEQESGKIGDNEQFDR LNGSLVSSHVSTETEV FA LQKRGSDSSFEEASSEGELSLDSRMAQ YPAEEII
Sbjct:    1 MPVHQDASGVGLLLAARSGDVEFVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXVNAYDNNGWTAFAHVD----REWPRGGGLRAPLQLSSASIDQHGGATTSNGDTPLHMAAFHGREWAVEKLLRLGANRGAINDRGERPVEVARHNTVRAMLGPSTGSPNQDEEPAVGFASSFEEGEGDVPRNIPTNTKFGHRTIGGGNGRENADPGAGVVEGV-RRSFYETPSSKAKNRRVHRVLSQMEKSTLPSVEQESGKIGDNEQFDRSLNGSLVSSHVSTETEVRFASLQKRGSDSSFEEASSEGELSLDSRMAQHYPAEEII 327
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BLAST of mRNA_Ecto-sp13_S_contig93.20887.1 vs. uniprot
Match: D8LEM6_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM6_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 6.110e-121
Identity = 235/319 (73.67%), Postives = 249/319 (78.06%), Query Frame = 1 
Query:    1 MPVDQDASEVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTALHTSIANGREEVAFVLLSGDHQPASSNIXXXXXXXXXXXXXXXXXXXXWAVEMLLRLGANRGAINDRGERPVQVARHNTVCAMLGPSTGSPNQDEESTAGFASSFEEGEGDVLRNVPTNANFDHRTIGGGNGRENADPGAGFVEGVGRRSFYETQSSTAKNRRVHSVLSQMEKSTLPSVEQESGKIGDNEQFDRFLNGSLVSSHVSTETEVGFAFLQKRGSDSSFEEASSEGELSLDSRMAQ 957
            MPVDQDAS VGLLLAARSGDIEI+RSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXX   WTALHTSIANGRE+VAF LLSG HQPA  N+                    WAVE+LLRLGA+RGAIN+RGERPVQVARHNTV AMLGPSTGSPN DEE  AGFASSFEEGEGDV RN+PTNA+F H TI GGN RE                FYET SS AK+R+VH V SQ+E STLP VEQESGKIGDN+ FDR  NGSLVSSHVSTETE GFA LQKRGSDSSFEEASSE  L +  R +Q
Sbjct:    1 MPVDQDASGVGLLLAARSGDIEILRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTALHTSIANGREDVAFALLSGHHQPALINMEATTSNGDTPLHMAAFHGREWAVEILLRLGASRGAINNRGERPVQVARHNTVRAMLGPSTGSPNHDEELAAGFASSFEEGEGDVPRNIPTNASFGHGTISGGNRREXXXXXXXXXXXXXXXXFYETPSSKAKSRQVHGVPSQLENSTLPLVEQESGKIGDNKHFDRLPNGSLVSSHVSTETEEGFASLQKRGSDSSFEEASSEVSLHVRVRFSQ 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93.20887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS46_9PHAE1.310e-13076.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEM6_ECTSI6.110e-12173.67Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93contigEcto-sp13_S_contig93:7606..9117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score368.6
Seed ortholog evalue3e-99
Seed eggNOG ortholog2880.D8LEM6
Model size1002
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_002440.1
Cds size1002
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464199.0746922-CDS-Ecto-sp13_S_contig93:7605..82891681464199.0746922-CDS-Ecto-sp13_S_contig93:7605..8289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 7606..8289 -
1681464199.0883226-CDS-Ecto-sp13_S_contig93:8493..86461681464199.0883226-CDS-Ecto-sp13_S_contig93:8493..8646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 8494..8646 -
1681464199.0994549-CDS-Ecto-sp13_S_contig93:8952..91171681464199.0994549-CDS-Ecto-sp13_S_contig93:8952..9117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 8953..9117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93.20887.1prot_Ecto-sp13_S_contig93.20887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93 7606..9117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93.20887.1

>prot_Ecto-sp13_S_contig93.20887.1 ID=prot_Ecto-sp13_S_contig93.20887.1|Name=mRNA_Ecto-sp13_S_contig93.20887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MPVDQDASEVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSGLLKASR
YGHAQVVELLLMAGADVNACDNNGWTALHTSIANGREEVAFVLLSGDHQP
ASSNIEAITSNGDTPLHMAAFHGREWAVEMLLRLGANRGAINDRGERPVQ
VARHNTVCAMLGPSTGSPNQDEESTAGFASSFEEGEGDVLRNVPTNANFD
HRTIGGGNGRENADPGAGFVEGVGRRSFYETQSSTAKNRRVHSVLSQMEK
STLPSVEQESGKIGDNEQFDRFLNGSLVSSHVSTETEVGFAFLQKRGSDS
SFEEASSEGELSLDSRMAQYPAEEIIPCGTGDH*
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mRNA from alignment at Ecto-sp13_S_contig93:7606..9117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93.20887.1 ID=mRNA_Ecto-sp13_S_contig93.20887.1|Name=mRNA_Ecto-sp13_S_contig93.20887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:7606..9117- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCGACCAGGATGCATCTGAGGTCGGCCTCCTTTTAGCTGCTAG
AAGTGGCGATATCGAAATTGTACGCTCTCTGGTACGTCAAGGCGCAGAGT
TGGAGCAGCGAGACATACTAGGGGACAGCGGGCTCCTGAAGGCTTCTCGG
TATGGCCATGCTCAGGTACACAATGTTACGGATACATCTCATCTCTGTGG
CTGGTTGTTGTTCGATAAAGGGGGCTAATCCCCTCGGACACCCAGTCAGC
GCTGAGTATTCAGGCCAGTGGTACACCGTTTCCTCAACAGCAAGGATGGG
ATGAGGCGACAACCAACAACACGCTGCCAACAACGCATAATACCCACAAC
TACAATGGCTGTATGTACGTACAACATGTTCGGTGTACGTAACGAAACCC
ACAGCTTCATCATTATTTCAAGACCATCAAACCCCTCGTTCATCATCGAG
CACCACCTCGTATGTGTGAAGGTGGTTGAATTGCTGCTCATGGCCGGCGC
CGACGTCAATGCCTGCGACAACAACGGATGGACCGCTTTGCACACGTCGA
TCGCGAACGGCCGCGAGGAGGTGGCCTTCGTGCTCCTCTCTGGCGATCAC
CAGCCAGCATCGAGCAACATTGAGGTGTGTGCATAGATAGCTGTGAGCAC
CGACCTCTTCACGCGCTTTACGATCTGGTTCACTCACACGGTCGTGGCGA
AAGACCGAGTCCTGGGGCACTCAAAACATGGTCACAGCGCCGCCCTACCC
AAAGAACCAAAGTGCGTACAGCAGATGCACTTTAATACCTTCCCTCGACG
ATGTTTCTCGTGTACCCCGGGACGGCAGGCGATTACCTCGAACGGAGACA
CGCCTCTCCATATGGCGGCCTTCCACGGGAGAGAGTGGGCCGTAGAAATG
CTCCTGCGTCTTGGGGCAAATCGTGGGGCCATCAACGATAGAGGAGAGCG
CCCGGTTCAGGTAGCAAGGCACAACACCGTGTGTGCGATGCTCGGACCTT
CGACGGGATCACCCAACCAAGACGAAGAATCTACTGCCGGATTCGCTTCC
AGCTTTGAAGAGGGTGAGGGCGACGTGCTGCGAAACGTTCCTACCAATGC
CAACTTCGACCATCGCACCATCGGTGGTGGAAATGGGCGGGAGAATGCAG
ACCCCGGCGCGGGATTTGTCGAGGGGGTTGGACGACGTTCTTTCTATGAG
ACACAATCGTCTACAGCAAAGAACCGGCGAGTGCACAGCGTGCTGAGCCA
AATGGAAAAATCCACGTTGCCCTCGGTGGAGCAGGAGTCCGGAAAAATAG
GAGACAACGAACAGTTCGACCGGTTTCTCAACGGCAGCCTTGTCAGCAGC
CACGTTTCGACAGAGACAGAAGTGGGGTTTGCTTTCTTGCAGAAACGAGG
AAGCGATTCCTCGTTCGAAGAAGCCTCATCGGAAGGTGAATTGTCCCTCG
ACAGCAGAATGGCACAGTATCCGGCAGAGGAAATCATACCCTGTGGTACC
GGTGATCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93:7606..9117-

>mRNA_Ecto-sp13_S_contig93.20887.1 ID=mRNA_Ecto-sp13_S_contig93.20887.1|Name=mRNA_Ecto-sp13_S_contig93.20887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:7606..9117- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCGACCAGGATGCATCTGAGGTCGGCCTCCTTTTAGCTGCTAG
AAGTGGCGATATCGAAATTGTACGCTCTCTGGTACGTCAAGGCGCAGAGT
TGGAGCAGCGAGACATACTAGGGGACAGCGGGCTCCTGAAGGCTTCTCGG
TATGGCCATGCTCAGGTGGTTGAATTGCTGCTCATGGCCGGCGCCGACGT
CAATGCCTGCGACAACAACGGATGGACCGCTTTGCACACGTCGATCGCGA
ACGGCCGCGAGGAGGTGGCCTTCGTGCTCCTCTCTGGCGATCACCAGCCA
GCATCGAGCAACATTGAGGCGATTACCTCGAACGGAGACACGCCTCTCCA
TATGGCGGCCTTCCACGGGAGAGAGTGGGCCGTAGAAATGCTCCTGCGTC
TTGGGGCAAATCGTGGGGCCATCAACGATAGAGGAGAGCGCCCGGTTCAG
GTAGCAAGGCACAACACCGTGTGTGCGATGCTCGGACCTTCGACGGGATC
ACCCAACCAAGACGAAGAATCTACTGCCGGATTCGCTTCCAGCTTTGAAG
AGGGTGAGGGCGACGTGCTGCGAAACGTTCCTACCAATGCCAACTTCGAC
CATCGCACCATCGGTGGTGGAAATGGGCGGGAGAATGCAGACCCCGGCGC
GGGATTTGTCGAGGGGGTTGGACGACGTTCTTTCTATGAGACACAATCGT
CTACAGCAAAGAACCGGCGAGTGCACAGCGTGCTGAGCCAAATGGAAAAA
TCCACGTTGCCCTCGGTGGAGCAGGAGTCCGGAAAAATAGGAGACAACGA
ACAGTTCGACCGGTTTCTCAACGGCAGCCTTGTCAGCAGCCACGTTTCGA
CAGAGACAGAAGTGGGGTTTGCTTTCTTGCAGAAACGAGGAAGCGATTCC
TCGTTCGAAGAAGCCTCATCGGAAGGTGAATTGTCCCTCGACAGCAGAAT
GGCACAGTATCCGGCAGAGGAAATCATACCCTGTGGTACCGGTGATCACT
GA
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