mRNA_Ecto-sp13_S_contig9295.20882.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9295.20882.1
Unique NamemRNA_Ecto-sp13_S_contig9295.20882.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9295.20882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9295contigEcto-sp13_S_contig9295:3284..3907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size624
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.8633947-CDS-Ecto-sp13_S_contig9295:3283..37541681464198.8633947-CDS-Ecto-sp13_S_contig9295:3283..3754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9295 3284..3754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.8766692-UTR-Ecto-sp13_S_contig9295:3754..39071681464198.8766692-UTR-Ecto-sp13_S_contig9295:3754..3907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9295 3755..3907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9295.20882.1prot_Ecto-sp13_S_contig9295.20882.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9295 3284..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9295.20882.1

>prot_Ecto-sp13_S_contig9295.20882.1 ID=prot_Ecto-sp13_S_contig9295.20882.1|Name=mRNA_Ecto-sp13_S_contig9295.20882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
YGGRGETKRTATESSREREWEERSREEPWVLKTGGSPSSITASEEQHSRS
IHAPNGVTISQARRLKPSSTWEKEQARQGAGGVDYPLSSPGSHPKTTTWL
QNHSTQVVGTNRRISGPNTIGRTQKRKYVLMYAVRQQGELETLVGRETFT
QNCCVQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig9295:3284..3907+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9295.20882.1 ID=mRNA_Ecto-sp13_S_contig9295.20882.1|Name=mRNA_Ecto-sp13_S_contig9295.20882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9295:3284..3907+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATGGCGGCCGTGGAGAAACCAAACGAACGGCAACAGAAAGTAGTAGGGA
GAGAGAATGGGAAGAGAGGAGCCGCGAGGAACCTTGGGTGCTCAAAACCG
GAGGTTCCCCCAGCTCGATCACAGCTTCTGAGGAACAGCACTCTAGAAGT
ATACACGCACCAAATGGCGTAACGATAAGCCAGGCACGGCGCCTGAAACC
GTCAAGCACATGGGAGAAGGAGCAAGCGAGACAAGGGGCGGGGGGGGTCG
ACTATCCACTCTCAAGCCCGGGCTCACACCCAAAGACGACAACATGGTTA
CAGAACCATAGCACACAAGTTGTTGGGACGAATCGCAGGATCTCAGGACC
AAACACGATTGGAAGAACACAAAAGCGAAAATACGTTCTCATGTATGCCG
TTAGGCAACAGGGAGAGCTGGAAACACTGGTTGGGCGTGAAACTTTCACA
CAGAACTGCTGTGTGCAATAACAATAACCGCACTTCGTCTGTCTACATCC
CGCTCCATGGCAAAACTCTCAACAAGGTTCGCTCCTTTAGCGTTCCGCGG
CTTGTCAGCGGGCGACACATGTACGTATGCACACATGGGTCCACGCCGGC
TCTTTCCTTCTGCTGTGTGCTATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9295:3284..3907+

>mRNA_Ecto-sp13_S_contig9295.20882.1 ID=mRNA_Ecto-sp13_S_contig9295.20882.1|Name=mRNA_Ecto-sp13_S_contig9295.20882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9295:3284..3907+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATGGCGGCCGTGGAGAAACCAAACGAACGGCAACAGAAAGTAGTAGGGA
GAGAGAATGGGAAGAGAGGAGCCGCGAGGAACCTTGGGTGCTCAAAACCG
GAGGTTCCCCCAGCTCGATCACAGCTTCTGAGGAACAGCACTCTAGAAGT
ATACACGCACCAAATGGCGTAACGATAAGCCAGGCACGGCGCCTGAAACC
GTCAAGCACATGGGAGAAGGAGCAAGCGAGACAAGGGGCGGGGGGGGTCG
ACTATCCACTCTCAAGCCCGGGCTCACACCCAAAGACGACAACATGGTTA
CAGAACCATAGCACACAAGTTGTTGGGACGAATCGCAGGATCTCAGGACC
AAACACGATTGGAAGAACACAAAAGCGAAAATACGTTCTCATGTATGCCG
TTAGGCAACAGGGAGAGCTGGAAACACTGGTTGGGCGTGAAACTTTCACA
CAGAACTGCTGTGTGCAATAA
back to top