mRNA_Ecto-sp13_S_contig929.20881.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig929.20881.1
Unique NamemRNA_Ecto-sp13_S_contig929.20881.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.440e-14
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:  172 IMMVSGFNQRIVRSAXXXXXQQLALLIGHKFRQSLQGLGTWMPNLETLRVLDWDTY*NTGPQHDSLLR 375
            ++M S FNQRI RSA     ++L L  GHKFRQSLQGLGTWMPNLE+LR+L+W        Q+DSLLR
Sbjct:    1 MIMRSEFNQRIGRSAWPPSLRRLTL--GHKFRQSLQGLGTWMPNLESLRLLEW----YVDLQNDSLLR 62
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BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-6
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  244 LLIGHKFRQSLQGLGTWMPNLETLRVLDWDTY*NTGPQHDSLLRGM 381
            L +GHKFRQSLQGLGTW+PNLE    LD   + N     DSLLRG+
Sbjct:  330 LTLGHKFRQSLQGLGTWIPNLEIFHFLD---HSNGSGDEDSLLRGI 372
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BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.740e-6
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  151 DNRGDNRIMMVSGFNQRIVRSAXXXXXQQLALLIGHKFRQSLQGLGTWMPNLETLRVLDWDTY*NTGPQHDSLLRGM 381
            D  G    +M+S FNQR+         ++L L  GHKF++SLQGLGT MPNLE   +LD       G   +  LRG+
Sbjct:  313 DGEGFENAVMLSAFNQRVDMCEWPVSMRRLTL--GHKFKESLQGLGTRMPNLEAFHLLDH----RNGSGSEDSLRGI 383
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BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.060e-5
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:  151 DNRGDNRIMMVSGFNQRIVRSAXXXXXQQLALLIGHKFRQSLQGLGTWMPNLETLRVLDWDTY*NTGPQHDSLLR 375
            D    N +++ + F+Q I  S      ++L L  GH FRQSLQGLGTWMPNLE L +L    Y  +G    + LR
Sbjct:  319 DEFAGNGMVIFANFDQPIGSSVGPALLRRLVL--GHMFRQSLQGLGTWMPNLEVLHLLH---YHGSGLGDSNFLR 388
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BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.800e-5
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  172 IMMVSGFNQRIVRSAXXXXXQQLALLIGHKFRQSLQGLGTWMPNLETLRVLDWDTY*NTGPQHDSLLRGM 381
            +++ S FN+ I  SA      +L L  G  FRQSLQ LGTWMPNLET  +L    + +     DS LRG+
Sbjct:  248 VVVTSKFNRXIGASAWPKAMHRLTL--GQNFRQSLQELGTWMPNLETFHLLH---HIHDSGTEDSFLRGI 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig929.20881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCG0_ECTSI3.440e-1460.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE1.300e-660.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE4.740e-641.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE2.060e-542.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE4.800e-544.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig929contigEcto-sp13_S_contig929:15211..15708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.7983956-UTR-Ecto-sp13_S_contig929:15210..153841681464198.7983956-UTR-Ecto-sp13_S_contig929:15210..15384Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig929 15211..15384 +
1681464198.8212264-UTR-Ecto-sp13_S_contig929:15552..157081681464198.8212264-UTR-Ecto-sp13_S_contig929:15552..15708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig929 15553..15708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.8096938-CDS-Ecto-sp13_S_contig929:15384..155521681464198.8096938-CDS-Ecto-sp13_S_contig929:15384..15552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig929 15385..15552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig929.20881.1prot_Ecto-sp13_S_contig929.20881.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig929 15385..15552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig929.20881.1

>prot_Ecto-sp13_S_contig929.20881.1 ID=prot_Ecto-sp13_S_contig929.20881.1|Name=mRNA_Ecto-sp13_S_contig929.20881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MMVSGFNQRIVRSAWPASLQQLALLIGHKFRQSLQGLGTWMPNLETLRVL
DWDTY*
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mRNA from alignment at Ecto-sp13_S_contig929:15211..15708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig929.20881.1 ID=mRNA_Ecto-sp13_S_contig929.20881.1|Name=mRNA_Ecto-sp13_S_contig929.20881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig929:15211..15708+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCATCTTCAATAGCCAGTTCATCCAGCCCATTCAGGGCGTCTTTTGGCC
AGACTCGCTTCAGAGGCTCGTTTTCGGACGTTGCTCGAACTATCGAATTG
ATAACGTGAGGTGGCCGGCGTCATTGCAAGTACTTACCTTTGGAGAGTTC
GACAACAGGGGGGACAACCGGATAATGATGGTGTCGGGGTTCAACCAGCG
TATTGTCCGGAGTGCTTGGCCTGCATCGCTGCAGCAACTCGCACTATTAA
TAGGCCACAAGTTCAGGCAGTCACTGCAAGGACTAGGCACATGGATGCCC
AACCTTGAAACGCTACGTGTTCTTGACTGGGATACTTACTGAAATACTGG
TCCACAACACGATAGCCTTCTCCGCGGAATGACCTAAGGGCCTTCGTGAA
CTGACCGTGCTTGAAGGATCGAACTTAGGTAACGTCGTAATTCCGAACTT
AGGTTGGGTCGTAATTCCGAACTTAGATTGGGTCGTATTTCCTTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig929:15211..15708+

>mRNA_Ecto-sp13_S_contig929.20881.1 ID=mRNA_Ecto-sp13_S_contig929.20881.1|Name=mRNA_Ecto-sp13_S_contig929.20881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig929:15211..15708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTGTCGGGGTTCAACCAGCGTATTGTCCGGAGTGCTTGGCCTGC
ATCGCTGCAGCAACTCGCACTATTAATAGGCCACAAGTTCAGGCAGTCAC
TGCAAGGACTAGGCACATGGATGCCCAACCTTGAAACGCTACGTGTTCTT
GACTGGGATACTTACTGA
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