mRNA_Ecto-sp13_S_contig12508.2088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12508.2088.1
Unique NamemRNA_Ecto-sp13_S_contig12508.2088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12508.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12508contigEcto-sp13_S_contig12508:2732..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.4188437-CDS-Ecto-sp13_S_contig12508:2732..28091681462667.4188437-CDS-Ecto-sp13_S_contig12508:2732..2809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12508 2733..2809 -
1681462667.431533-CDS-Ecto-sp13_S_contig12508:3496..35691681462667.431533-CDS-Ecto-sp13_S_contig12508:3496..3569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12508 3497..3569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12508.2088.1prot_Ecto-sp13_S_contig12508.2088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12508 2733..3569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12508.2088.1

>prot_Ecto-sp13_S_contig12508.2088.1 ID=prot_Ecto-sp13_S_contig12508.2088.1|Name=mRNA_Ecto-sp13_S_contig12508.2088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
PPLLVANGADGHGNTTVVGGRSCTGCERLVNGRNIRTFTVDVTKAEDVQD
back to top

mRNA from alignment at Ecto-sp13_S_contig12508:2732..3569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12508.2088.1 ID=mRNA_Ecto-sp13_S_contig12508.2088.1|Name=mRNA_Ecto-sp13_S_contig12508.2088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12508:2732..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCGTTGTTGGTGGCGAACGGTGCTGATGGACATGGAAACACCACCGT
TGTGGGTGGTCGATCATGCACAGGTATGAAAGGCTTTTCTGTTTTTATGC
AAAACATCGGCTTGGGTGGGCTTACCGCTTCCACGGAGCTCTGGAACCAC
TCTTCTTGATGCAGGGCATTGGCTTGGGTGGGCTTATTTCTCCTAAGGAG
TATCGAATACGGTATTTCCGTCGATATGGCGATGCTGACGTCTGAGTCGG
CCGCACAATGTTGGTGGAAAATCGCGTCTTTCTTTGTGCTCCCGTGCAAT
AATTCAGTTTTGGAGGACCAGTGGTCGTTAGACCTCCTCCGGCTCTCGCT
TCTGCGGAGCCAGACGTCTGTCTCTCGTCCACCGTTGGTGCCAATGCGGC
CGCCAATATATTATTTTCACTCGAGCACCTTGTCCGGGAACTAACAGCTG
TCGGAACATGGGTTTTGCAAGCATACCACGTTACCACGTCTTTCTACCTG
GACACCGCGCGGACTTTACGTATGTTGGAGCGCTCTTTTCTGGGGGATTG
GTGTAAATTTGTCTGTCCGTTGGTGGATTCGGCAATGTTGGATTTGCCGA
GCCCGCAAGTTACCCTCCAAATCAAACGTATCGATGGCATACGCTCACTC
TGCCCCTCCCTTATGGACCGAGTGTTCAGTGAGCGTTGACTTCTTTTGGA
CCGTTGCTGGTGGATCACGTACTTGCCTTCCTGCTCTTTTCTTCGAACTC
CTCATCCGAGGGTGCGAACGTTTAGTCAATGGCAGGAACATTCGCACTTT
CACGGTTGATGTGACCAAAGCTGAGGACGTCCAAGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12508:2732..3569-

>mRNA_Ecto-sp13_S_contig12508.2088.1 ID=mRNA_Ecto-sp13_S_contig12508.2088.1|Name=mRNA_Ecto-sp13_S_contig12508.2088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12508:2732..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCGTTGTTGGTGGCGAACGGTGCTGATGGACATGGAAACACCACCGT
TGTGGGTGGTCGATCATGCACAGGGTGCGAACGTTTAGTCAATGGCAGGA
ACATTCGCACTTTCACGGTTGATGTGACCAAAGCTGAGGACGTCCAAGAC
back to top