mRNA_Ecto-sp13_S_contig9288.20879.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9288.20879.1
Unique NamemRNA_Ecto-sp13_S_contig9288.20879.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9288.20879.1 vs. uniprot
Match: A0A6H5L2J9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.830e-21
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   58 TSCSRLLPLPPSPSWRLYAARRANPDXXXXXXDDRGRTDPPTMASGRPPVRGNAPASRGK 237
            T  SR+LPLPPSPSWRLYAARRANPDXXXXX DDRGRTDPPT+A GRPPVRGNAPASR +
Sbjct:  126 TPRSRVLPLPPSPSWRLYAARRANPDXXXXXYDDRGRTDPPTVAPGRPPVRGNAPASRAR 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9288.20879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2J9_9PHAE2.830e-2186.67SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9288contigEcto-sp13_S_contig9288:5171..5563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.726634-CDS-Ecto-sp13_S_contig9288:5170..55631681464198.726634-CDS-Ecto-sp13_S_contig9288:5170..5563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9288 5171..5563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9288.20879.1prot_Ecto-sp13_S_contig9288.20879.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9288 5171..5563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9288.20879.1

>prot_Ecto-sp13_S_contig9288.20879.1 ID=prot_Ecto-sp13_S_contig9288.20879.1|Name=mRNA_Ecto-sp13_S_contig9288.20879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MQQHRRRRQPASAAAAASGTSCSRLLPLPPSPSWRLYAARRANPDDDDYY
YDDRGRTDPPTMASGRPPVRGNAPASRGKGRPGSGAGRGVGGSNNRGESS
SMASAGVGGGGRGRGIDQSDPLVRDWNSAKV
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mRNA from alignment at Ecto-sp13_S_contig9288:5171..5563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9288.20879.1 ID=mRNA_Ecto-sp13_S_contig9288.20879.1|Name=mRNA_Ecto-sp13_S_contig9288.20879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9288:5171..5563+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAGCATCGACGGCGACGGCAACCCGCTTCTGCGGCGGCGGCGGC
GTCGGGAACTTCCTGCTCGCGCCTACTGCCGCTGCCGCCATCCCCATCCT
GGCGGCTCTACGCCGCCCGCCGCGCGAACCCTGACGACGACGACTACTAC
TACGATGACCGCGGCCGCACTGACCCGCCCACTATGGCGTCCGGTCGACC
GCCGGTCCGCGGCAATGCGCCGGCGAGCAGAGGGAAAGGGCGCCCTGGGT
CAGGGGCGGGCCGCGGCGTTGGCGGCAGCAACAACCGGGGCGAGTCGTCT
TCTATGGCATCAGCCGGTGTGGGGGGTGGGGGCAGAGGGCGAGGCATAGA
CCAGAGCGACCCTCTCGTGAGAGATTGGAATTCCGCCAAAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9288:5171..5563+

>mRNA_Ecto-sp13_S_contig9288.20879.1 ID=mRNA_Ecto-sp13_S_contig9288.20879.1|Name=mRNA_Ecto-sp13_S_contig9288.20879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9288:5171..5563+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAGCATCGACGGCGACGGCAACCCGCTTCTGCGGCGGCGGCGGC
GTCGGGAACTTCCTGCTCGCGCCTACTGCCGCTGCCGCCATCCCCATCCT
GGCGGCTCTACGCCGCCCGCCGCGCGAACCCTGACGACGACGACTACTAC
TACGATGACCGCGGCCGCACTGACCCGCCCACTATGGCGTCCGGTCGACC
GCCGGTCCGCGGCAATGCGCCGGCGAGCAGAGGGAAAGGGCGCCCTGGGT
CAGGGGCGGGCCGCGGCGTTGGCGGCAGCAACAACCGGGGCGAGTCGTCT
TCTATGGCATCAGCCGGTGTGGGGGGTGGGGGCAGAGGGCGAGGCATAGA
CCAGAGCGACCCTCTCGTGAGAGATTGGAATTCCGCCAAAGTG
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