mRNA_Ecto-sp13_S_contig92829.20877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92829.20877.1
Unique NamemRNA_Ecto-sp13_S_contig92829.20877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig92829.20877.1 vs. uniprot
Match: D7G4S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.450e-6
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  148 IVCTELSRSKATALKHVEEEINMAMQRRLAAADSNL 255
            I   E    +ATALKHVEEEINMAMQRRLAAADSNL
Sbjct:  132 IEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNL 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92829.20877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S1_ECTSI4.450e-677.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92829contigEcto-sp13_S_contig92829:3..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.6357338-CDS-Ecto-sp13_S_contig92829:2..1791681464198.6357338-CDS-Ecto-sp13_S_contig92829:2..179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92829 3..179 +
1681464198.647644-CDS-Ecto-sp13_S_contig92829:460..5381681464198.647644-CDS-Ecto-sp13_S_contig92829:460..538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92829 461..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92829.20877.1prot_Ecto-sp13_S_contig92829.20877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92829 3..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92829.20877.1

>prot_Ecto-sp13_S_contig92829.20877.1 ID=prot_Ecto-sp13_S_contig92829.20877.1|Name=mRNA_Ecto-sp13_S_contig92829.20877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
SKEFKLPYQQLSPPKRAGAGLLRQAAAGSGARSLHLTLACPLLRDRAIWI
VCTELSRSKATALKHVEEEINMAMQRRLAAADSNL
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mRNA from alignment at Ecto-sp13_S_contig92829:3..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92829.20877.1 ID=mRNA_Ecto-sp13_S_contig92829.20877.1|Name=mRNA_Ecto-sp13_S_contig92829.20877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92829:3..538+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAAAGAGTTCAAGTTACCATACCAGCAGCTCTCCCCTCCCAAGAGAGC
GGGCGCGGGATTGCTACGGCAGGCAGCAGCAGGCTCAGGGGCCCGGAGTC
TGCACCTCACCCTTGCATGTCCACTTTTAAGAGACCGTGCCATTTGGATC
GTGTGCACAGAGTTATCGCGCTCCAAGGTTGTCGTCTCTAGCGTGATTTG
TCCAAGTGGATTAGCTGTTGCTGATAGGGTCTGGTCGGTTGCGCTTCGGC
GCATCATCTGTCTGGACTGTTCAAGCCGCGCACAGCAGTACACCGCATCT
CACACGCCTCTAGTCTAAAGCTGTACGAACATACGCGTACATCATGGGCG
CGGCGGTTTCTGTATCTTTGAACATGACCACAGACTGTTATTTAGGTCTT
GCACGTACTTCTGTTGTTGACCGTTGTGTGATGGTGGACGCTTGTTCTTC
ATTGGCAGGCCACTGCGCTGAAACACGTGGAGGAGGAGATCAATATGGCC
ATGCAAAGAAGACTTGCGGCTGCCGACTCGAACCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92829:3..538+

>mRNA_Ecto-sp13_S_contig92829.20877.1 ID=mRNA_Ecto-sp13_S_contig92829.20877.1|Name=mRNA_Ecto-sp13_S_contig92829.20877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92829:3..538+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAAAGAGTTCAAGTTACCATACCAGCAGCTCTCCCCTCCCAAGAGAGC
GGGCGCGGGATTGCTACGGCAGGCAGCAGCAGGCTCAGGGGCCCGGAGTC
TGCACCTCACCCTTGCATGTCCACTTTTAAGAGACCGTGCCATTTGGATC
GTGTGCACAGAGTTATCGCGCTCCAAGGCCACTGCGCTGAAACACGTGGA
GGAGGAGATCAATATGGCCATGCAAAGAAGACTTGCGGCTGCCGACTCGA
ACCTG
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