mRNA_Ecto-sp13_S_contig928.20873.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig928.20873.1
Unique NamemRNA_Ecto-sp13_S_contig928.20873.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig928.20873.1 vs. uniprot
Match: D7FKQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.040e-26
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 MNEPEGERRRFDWRIQGAETSLSSMGNMGASIALLVIGPRRPCQGHPTARARAGG 165
            MNEPEGERRRFD RIQ AETSLSSMGNMGAS AL++I PRRPCQGHP ARARAGG
Sbjct:    1 MNEPEGERRRFDCRIQRAETSLSSMGNMGASNALVIIRPRRPCQGHPAARARAGG 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig928.20873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKQ5_ECTSI4.040e-2687.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig928contigEcto-sp13_S_contig928:16057..17016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001750.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.464159-CDS-Ecto-sp13_S_contig928:16056..160791681464198.464159-CDS-Ecto-sp13_S_contig928:16056..16079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig928 16057..16079 +
1681464198.4740546-CDS-Ecto-sp13_S_contig928:16871..170161681464198.4740546-CDS-Ecto-sp13_S_contig928:16871..17016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig928 16872..17016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig928.20873.1prot_Ecto-sp13_S_contig928.20873.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig928 16057..17016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig928.20873.1

>prot_Ecto-sp13_S_contig928.20873.1 ID=prot_Ecto-sp13_S_contig928.20873.1|Name=mRNA_Ecto-sp13_S_contig928.20873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MNEPEGERRRFDWRIQGAETSLSSMGNMGASIALLVIGPRRPCQGHPTAR
ARAGG*
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mRNA from alignment at Ecto-sp13_S_contig928:16057..17016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig928.20873.1 ID=mRNA_Ecto-sp13_S_contig928.20873.1|Name=mRNA_Ecto-sp13_S_contig928.20873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig928:16057..17016+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGAGCCGGAGGGGGAGAGGTGAGATGTTCTTCTCTGAAGTAGGAA
ACAGTAATTCGCACGTCACCTGTACCCGCACATTGTACATCATTGCCCAA
CTGTACTGCTGGACACATCAACTTTATGTGCCTCTTGTCGTCACAGTGTC
GTACAAGAGCGGTGCGACCGCTGCACGCGAAATACGGAAGTGTTTACGCC
TATATAACTTGCTGTTTACTGCCCCGGAACATGGAGCTCTCCACACCGCC
ACCACATGCGTTCAAGCTCACACTACTTTTGATTTGAGGATAACCGAATT
GTTTTGTGCCGCCGGTCGCCCCGCCCGGCGGTCTTGTGGGTACCCTCGCA
GCCCGTCAAGGGCCGGGTCATGGGTTCGAGTCCCGACAGACTGGCGGTTT
TTCGCACTTAAATCATCCTGGTCTAAGGTCTAAGGTGTAGGCGATGCGCT
GCAAAGCTCGTTGTAAGGAAACTTGTCCGACTTCACTTCAAATAGTCGCG
TGGGAACGGATTGCTGTACCTTCTCGCGATAAAAATGTCTCAGGCAGAAC
CTCTGTGGCCCCGGTTCGGGCGTCTTGCTAGCTTGCTAGCTAGTAGCAAT
GGAGGATGGGGGCCAGAGGGGCAAACGGCAAAGTCCAATAGTGGTAGAAA
GAAATAAAAAATGCTGCACTTATTGGTGAAGAAATGGTTATGTCTAACAT
CACTACCCTTTTTACATCTTAAATATGTTGTGAGAAGTCGACGTAGTAGG
TGCTGTGTGCGCCGCCCCTCGCTGTGGACACTTCGCCCTACCTTTCCCAT
ACGTGCTGCGCACAGACGGAGGTTTGACTGGAGGATCCAGGGGGCGGAAA
CTTCCCTCTCTTCGATGGGCAATATGGGGGCATCAATTGCGCTGCTTGTC
ATAGGACCCCGAAGGCCGTGCCAAGGGCATCCGACGGCGCGTGCAAGAGC
TGGAGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig928:16057..17016+

>mRNA_Ecto-sp13_S_contig928.20873.1 ID=mRNA_Ecto-sp13_S_contig928.20873.1|Name=mRNA_Ecto-sp13_S_contig928.20873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig928:16057..17016+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGAGCCGGAGGGGGAGAGACGGAGGTTTGACTGGAGGATCCAGGG
GGCGGAAACTTCCCTCTCTTCGATGGGCAATATGGGGGCATCAATTGCGC
TGCTTGTCATAGGACCCCGAAGGCCGTGCCAAGGGCATCCGACGGCGCGT
GCAAGAGCTGGAGGCTGA
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