mRNA_Ecto-sp13_S_contig12506.2087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12506.2087.1
Unique NamemRNA_Ecto-sp13_S_contig12506.2087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12506.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12506contigEcto-sp13_S_contig12506:3532..4887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size753
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_003510.1
Cds size339
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12506.2087.1prot_Ecto-sp13_S_contig12506.2087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12506 3865..4806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.34708-UTR-Ecto-sp13_S_contig12506:3531..38641681462667.34708-UTR-Ecto-sp13_S_contig12506:3531..3864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12506 3532..3864 -
1681462667.3922648-UTR-Ecto-sp13_S_contig12506:4806..48871681462667.3922648-UTR-Ecto-sp13_S_contig12506:4806..4887Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12506 4807..4887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.3577151-CDS-Ecto-sp13_S_contig12506:3864..39281681462667.3577151-CDS-Ecto-sp13_S_contig12506:3864..3928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12506 3865..3928 -
1681462667.3692582-CDS-Ecto-sp13_S_contig12506:4206..43441681462667.3692582-CDS-Ecto-sp13_S_contig12506:4206..4344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12506 4207..4344 -
1681462667.3771152-CDS-Ecto-sp13_S_contig12506:4459..45401681462667.3771152-CDS-Ecto-sp13_S_contig12506:4459..4540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12506 4460..4540 -
1681462667.3846023-CDS-Ecto-sp13_S_contig12506:4750..48061681462667.3846023-CDS-Ecto-sp13_S_contig12506:4750..4806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12506 4751..4806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12506.2087.1

>prot_Ecto-sp13_S_contig12506.2087.1 ID=prot_Ecto-sp13_S_contig12506.2087.1|Name=mRNA_Ecto-sp13_S_contig12506.2087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MWRKVVDKNHKTVFRLCSSLTMAVNYQEREWGEGSQGRCLASPEKKARAE
EKLASDDQRILQPADHDPNRRIHFLYDDVGTLLCKVKTRNECRRHAIRLQ
SEIYHRADQERQ*
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mRNA from alignment at Ecto-sp13_S_contig12506:3532..4887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12506.2087.1 ID=mRNA_Ecto-sp13_S_contig12506.2087.1|Name=mRNA_Ecto-sp13_S_contig12506.2087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12506:3532..4887- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTGTAGGGAGGCCGCCTCGAAGTTTTTTGTCACGAGGGACTTCAAGGC
CCGCGGAAGAAAGGTCCCTGCAGACACGGCCATGTGGCGCAAAGTGGTCG
ACAAGAACCACAAGACAGTTTTTAGGCTGTGCTCGAGGTACATGAATCAC
GCGGCGCCTTGAATGTTGTACATAATGTGAACGCCATGACGGGTGCCACC
TTGACTTCAATTGTAGCTTAACCCGTATTGTTCTCGACACCTAGCGTTCC
CTTTCTCCCTCTCATGTCTTATCCTCGCTCTATAGCGGACAACTCTCATA
TTTTCCGTCGCGACCTCTCTCCTCCCTACGCTGTTCGGCCTCCGTAGCTT
GACAATGGCCGTAAATTACCAGGAGCGGGAATGGGGAGAAGGATCACAAG
GCCGATGCCTAGCCTCGCCGGAAAAGAAGTGAGTAGAGACAGGTGGTGTC
GAAACTCATCGCTGGCGTGCGAAGTTATCTGAAGAACACACTCGCCTCAC
CTGAACGACATGGCTGCTTCGTTGCCCCTCCAATCGGCTGCAGGGCGCGG
GCAGAAGAAAAGTTGGCGTCAGATGACCAGCGTATCCTTCAACCTGCAGA
CCACGATCCGAACAGACGAATACACTTCCTGTACGACGACGTTGGCACCT
TGCTGTGCAAGGTCAAGACCAGGAACGAATGGTTCAACCCTCACGAGAGG
CTAGGCAGGACGACGAAACACAACAGGCAGATTGGATACCGACGAATGGT
ACCACTCTGGCAGTGGACGGGAATGAACACTTTGGCGTGAGAAATCTCTT
TTGTGAGTCTTCAATTTTGGTCGAATCTTCCTTGAAGATAAAGATGAATC
ATCTGGTCGAAGTCTCGGACCACATGCCATTTTAACGCTCAACCCATCAT
TACGCCCCCTATAAGCCCCGATTTCGGTGTGTTGACGACCGACCGCCCAC
TTCGAGTAGCCGCCGCCACGCGATACGGCTACAGTCGGAGATCTACCACA
GGGCTGACCAAGAGCGGCAGTGACGGCAGCCGGTTCGCGTGTCAAAGCAC
CTGCCACCGCCACCGGTGGTTGGAAACCGAGTTTGGGAGCCCGTCATCGG
ATCTGATGTGGAATTTCTCCTGCCCAAGGCGCTGATGGGGGGTGCCGTAA
AGGACATCTGGTACCGCGTAAGGGTGTGCGAGTTAGACAGCAATGGAAAG
ATCGTGTTCGGCTTCCTCGTCAGTCAAGCAAGAACCGAAAAGATTACCAA
GTTTTCGTCAGTGTACGACTATAACGAGGTCGTCCGAAAAAAGGGCTACG
TGGTCTGCCCCGGTACCCACCTCACGTGGAAAGTCATGCCTACATCGGCG
GCACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12506:3532..4887-

>mRNA_Ecto-sp13_S_contig12506.2087.1 ID=mRNA_Ecto-sp13_S_contig12506.2087.1|Name=mRNA_Ecto-sp13_S_contig12506.2087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12506:3532..4887- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCGCAAAGTGGTCGACAAGAACCACAAGACAGTTTTTAGGCTGTG
CTCGAGCTTGACAATGGCCGTAAATTACCAGGAGCGGGAATGGGGAGAAG
GATCACAAGGCCGATGCCTAGCCTCGCCGGAAAAGAAGGCGCGGGCAGAA
GAAAAGTTGGCGTCAGATGACCAGCGTATCCTTCAACCTGCAGACCACGA
TCCGAACAGACGAATACACTTCCTGTACGACGACGTTGGCACCTTGCTGT
GCAAGGTCAAGACCAGGAACGAATGCCGCCGCCACGCGATACGGCTACAG
TCGGAGATCTACCACAGGGCTGACCAAGAGCGGCAGTGA
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