mRNA_Ecto-sp13_S_contig9279.20870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9279.20870.1
Unique NamemRNA_Ecto-sp13_S_contig9279.20870.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.880e-27
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -1 
Query:  125 RKNHFVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLQDSFVRRNP 292
            RKNHFVTQLRVRGRWHKYDCLAGGAVTS+DTFDADWNSSSQCMLAYL+ S     P
Sbjct:   20 RKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQCMLAYLKTSLCVATP 75
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BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 7.520e-23
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -1 
Query:  170 RKNHFVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQ 292
            RKNHFVTQLRVRGRWHKYDCLAGGA+TSSDTFDADWNSSSQ
Sbjct:   20 RKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 60
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BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.220e-13
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = -1 
Query:   95 KNHFVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLQDSFVRRNPTALHATRATT 289
            +NHFV+Q+ +RGRWHK DCL GG VTSSD F + W+ SS  ML YL+ S     P     + ATT
Sbjct:  123 RNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVHMLVYLRSSICVATPPPYAPSSATT 187
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BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.260e-10
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = -3 
Query:  153 RKMAQVRLPGGRSRDFLRHLRCRLEQLVAVYAGVP 257
            RKMAQVRLPGGRS +F RH+RCRLEQLVAVYAGVP
Sbjct:  432 RKMAQVRLPGGRSGNFFRHVRCRLEQLVAVYAGVP 466
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BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.040e-8
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = -1 
Query:  125 GRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLQDSFVRRNP 256
            GRWHKYDCL GG VTSSD +D+ W+ SS  ML YL+ +     P
Sbjct:  576 GRWHKYDCLQGGIVTSSDAYDSGWHVSSVHMLVYLRSAICVATP 619
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9279.20870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7U5_ECTSI1.880e-2785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSJ9_ECTSI7.520e-2397.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE3.220e-1352.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I1_ECTSI1.260e-1088.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPV6_9PHAE5.040e-856.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9279contigEcto-sp13_S_contig9279:2578..2869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size292
Hectar predicted targeting categorysignal peptide
Exons1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.2419364-UTR-Ecto-sp13_S_contig9279:2577..26081681464198.2419364-UTR-Ecto-sp13_S_contig9279:2577..2608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9279 2578..2608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.2522418-CDS-Ecto-sp13_S_contig9279:2608..28691681464198.2522418-CDS-Ecto-sp13_S_contig9279:2608..2869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9279 2609..2869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9279.20870.1prot_Ecto-sp13_S_contig9279.20870.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9279 2609..2869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9279.20870.1

>prot_Ecto-sp13_S_contig9279.20870.1 ID=prot_Ecto-sp13_S_contig9279.20870.1|Name=mRNA_Ecto-sp13_S_contig9279.20870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MLRGALMIPARRAAVVGVMTVAWLSPGRAVMMLLLVSRVKRWGCDAQKSL
EGTPAYTATSCSSRHRRCLRKSRLLPPGSRTCAIFL*
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mRNA from alignment at Ecto-sp13_S_contig9279:2578..2869-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9279.20870.1 ID=mRNA_Ecto-sp13_S_contig9279.20870.1|Name=mRNA_Ecto-sp13_S_contig9279.20870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9279:2578..2869- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCGAGGGGCGTTGATGATTCCGGCCCGAAGGGCTGCTGTCGTCGG
CGTGATGACGGTGGCCTGGTTGTCGCCCGGAAGGGCTGTTATGATGTTGT
TGCTCGTGTCGCGTGTAAAGCGGTGGGGTTGCGACGCACAAAAGAGTCTT
GAAGGTACGCCAGCATACACTGCGACGAGCTGTTCCAGTCGGCATCGAAG
GTGTCTGAGGAAGTCACGGCTCCTCCCGCCAGGCAGTCGTACTTGTGCCA
TCTTCCTCTGACACGCAGTTGAGTGACGAAGTGGTTCTTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9279:2578..2869-

>mRNA_Ecto-sp13_S_contig9279.20870.1 ID=mRNA_Ecto-sp13_S_contig9279.20870.1|Name=mRNA_Ecto-sp13_S_contig9279.20870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9279:2578..2869- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCGAGGGGCGTTGATGATTCCGGCCCGAAGGGCTGCTGTCGTCGG
CGTGATGACGGTGGCCTGGTTGTCGCCCGGAAGGGCTGTTATGATGTTGT
TGCTCGTGTCGCGTGTAAAGCGGTGGGGTTGCGACGCACAAAAGAGTCTT
GAAGGTACGCCAGCATACACTGCGACGAGCTGTTCCAGTCGGCATCGAAG
GTGTCTGAGGAAGTCACGGCTCCTCCCGCCAGGCAGTCGTACTTGTGCCA
TCTTCCTCTGA
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