mRNA_Ecto-sp13_S_contig9271.20863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9271.20863.1
Unique NamemRNA_Ecto-sp13_S_contig9271.20863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9271.20863.1 vs. uniprot
Match: D7FRW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW2_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 6.640e-65
Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:    1 MVLTWCLRI-RLQNTVQMRSDGATSGNVRWLNQPFTPGSEAQLADDASCGHLRTAGVSQYPEARRQRDGGLAVHPREVEPVRRLALESEISAAGSTVGIDADIGHIRHFFWLLDILWRRT-TISSLASLPSFP 393
            MV+ W  RI RLQN V++R+DGATSGNVRWL++P  PGSE QLADD SCG LRTA VSQ PEARR+RDGGLAVHPREVEPVRRLALESEI AAGS VGIDADIGH+R F  LLDILWRRT T+SSLASLPSFP
Sbjct:    1 MVVNWLPRIVRLQNPVRIRADGATSGNVRWLSRPLRPGSEPQLADDPSCGDLRTASVSQNPEARRRRDGGLAVHPREVEPVRRLALESEIFAAGSIVGIDADIGHLRLFLRLLDILWRRTFTLSSLASLPSFP 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9271.20863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRW2_ECTSI6.640e-6579.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9271contigEcto-sp13_S_contig9271:3831..6154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons5
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.8556664-CDS-Ecto-sp13_S_contig9271:3830..39381681464197.8556664-CDS-Ecto-sp13_S_contig9271:3830..3938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9271 3831..3938 +
1681464197.865327-CDS-Ecto-sp13_S_contig9271:4342..44141681464197.865327-CDS-Ecto-sp13_S_contig9271:4342..4414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9271 4343..4414 +
1681464197.874466-CDS-Ecto-sp13_S_contig9271:5769..58171681464197.874466-CDS-Ecto-sp13_S_contig9271:5769..5817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9271 5770..5817 +
1681464197.8837569-CDS-Ecto-sp13_S_contig9271:5972..61011681464197.8837569-CDS-Ecto-sp13_S_contig9271:5972..6101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9271 5973..6101 +
1681464197.8930402-CDS-Ecto-sp13_S_contig9271:6112..61541681464197.8930402-CDS-Ecto-sp13_S_contig9271:6112..6154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9271 6113..6154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9271.20863.1prot_Ecto-sp13_S_contig9271.20863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9271 3831..6154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9271.20863.1

>prot_Ecto-sp13_S_contig9271.20863.1 ID=prot_Ecto-sp13_S_contig9271.20863.1|Name=mRNA_Ecto-sp13_S_contig9271.20863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MVLTWCLRIRLQNTVQMRSDGATSGNVRWLNQPFTPGSEAQLADDASCGH
LRTAGVSQYPEARRQRDGGLAVHPREVEPVRRLALESEISAAGSTVGIDA
DIGHIRHFFWLLDILWRRTTISSLASLPSFPT*
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mRNA from alignment at Ecto-sp13_S_contig9271:3831..6154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9271.20863.1 ID=mRNA_Ecto-sp13_S_contig9271.20863.1|Name=mRNA_Ecto-sp13_S_contig9271.20863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9271:3831..6154+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGACTTGGTGCCTCCGCATTCGGTTGCAGAACACTGTACAAAT
GCGGTCTGATGGCGCTACCTCTGGGAATGTTCGATGGCTTAATCAACCTT
TCACCCCTGTGAGTGGAATGGAGATGGTTGGAGCGTCAGTGCAAGGGTGG
CGTCGAAAATTCCGGGCGTTCGGTTGGCGCGCAAGCGCTGAGAACGGCTC
AATCAACCGATTGTACACCAAATTCTACCAATGCTTTACCACGCCCAGAC
CATTTTGTTCGATGGGCGTGAATGTTTTGTAAATTTTCGTTGCCTGAGGT
GCCATGCAAATCGGCAAATTGTCAGCACTCCTCGTCTTGAAGATGAACTC
GCTGCCGCATGGGTACAACATGTGTTTGGATGCTGATGCTCACGGTGGAC
GATCTGCCATCGTCAATTCGTGGTCGATGTCCGGTCACCCCTTCCGCCCT
AGACTTCTACCACATTTTGCATGATATGTCATCGTCCCCGTGTGTTCCAT
AAATTTTGACAGGGATCTGAGGCGCAACTCGCTGACGACGCTTCCTGCGG
ACATCTTCGTACCGCTGGTGTCTCTCAATACCCTGTGAGAAAGCGCATCG
CCTTGATGTAGATTGCTCTTGGCCGACGGAATGCGAATTCTCACCAGGGT
CACACAGAGAGAAGGACGTATGCATACACTCTGATTGGTGCAGGGACAGA
CTGGCTTCACTCAATCGTGGTGAACAGCCGTCCTGGGAGTATGCGCATAC
GAACAATCGCAAGAGATGCTCAACACCATTTGACTATATTTATTCCCAAA
AGCCATCGTCTTAAGAAGCAGTTACCCATGTTGCAGAGTTGGCTCCCACA
AGATCGCTGAGAGCTTTTGGGGTCATTCGTCCCATTTTGTCTGGACGTAA
GGTTTGGACTAATATGATGAGGTCACGCAGCAAGAAGGCTAGTCCCGATG
TTGTTATCTACTTCCGTCAACCTTGCTTTTGTGTTGCTTGCGTCATATTT
CATCGCGAGAACGAGTCGGCCGTCCTTTTCCTTCGTCGATCGCGATTTCA
AACACGTTGCTCACTGTAGGGGGAATACTGTCAGATCGAATCCCAATTCC
TTAAGTCACGATGAGACTTGAATCCGCGTCTATCTCAGACAAAAGAGGAT
GCAGAATTAATTACGGTCTGCCACCCTGCGGTGAATATCCTCCTGGCACT
CCAGTTTCTTTGTTTGAGCTGTTGATGTTGTTGTGCATTGCACGACTAGC
ATTCAGTGCCTTGAAAATGAAACGCGAACGGTCAATAGCGGCATAACATG
GCGCCTCTCGTGTAGCAAGGGCCACACAAAAGCATCAATCGAGTCGGTGG
TTGGACCCGAAGGCTAGCACTGGATGGCGGAAACCACCACCGTAGACTGT
ACAAGTTTTCTCGAGACTCACGCTGTGAGCACAGTCACCCGGGTTGAACG
TTCATGGCCAGAGGGAGGTCGATTCACCGAACGAGGAGTTGGAGTTGGCC
TCAGTGTGTGATAGAGTCGGCTCTCACGTTTCTGGTCCACGGTTGTAGCT
GGGGTTCACAGTCTATGCACGTTTCGTTTGTGGATTTTGGATCCAAGAGG
ATGGCCTATTTCCCTTAGCATGACCGGGCGTTTGAGACCCTGGTGAAGCC
GAAAGGGGTGTGCGGACTTCCTTGCAGCCACAGATGACGATGAATGTTGC
GGCATAGAAAACGGTGAAGGTTGACTCCTTACCCCCGGGTCGTGACGTCC
TCCGGGTGAGAATAATAGACGCCTTAATCTCGCGAGAGCCGCCGTAAACC
ATGCGAGATGATTTTGGCCGATCAGCCTGGCGGACCTTCGGAATCCATGC
GAGCTTTCGAATGTACCCTTTTTGGCCAGCCTTTGGATTCTATTGCTCAA
TCTGCTCTCCTCTTATCGTCGTTGCCTTGGTTCTTTCAGGAGGCTCGCAG
GCAACGGGATGGAGGGCTTGCAGTGCATCCCCGAGAGGTGAGATGGGAAA
GGGACTGACGTCTAGCTTTGGACACTCGAGGATGGCTGTAAAAAATATCA
CCACAAGGGGTGTCACAAACGACCCGCCCTCTATGGAACTGATGAATCCT
ACGGTGTCACCAATTGCACGACAATCAAGTACAAACGCCCAGGTGGAACC
AGTGCGTCGACTGGCGTTAGAAAGCGAGATTTCCGCTGCGGGAAGCACAG
TGGGTATTGATGCAGACATCGGCCACATCCGACACTTTTTTTGGCTCCTG
GATATTCTGTGGAGAAGAACCGTTACTACTAGACTATATCTTCACTGGCG
TCTCTCCCTTCCTTCCCCACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9271:3831..6154+

>mRNA_Ecto-sp13_S_contig9271.20863.1 ID=mRNA_Ecto-sp13_S_contig9271.20863.1|Name=mRNA_Ecto-sp13_S_contig9271.20863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9271:3831..6154+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGACTTGGTGCCTCCGCATTCGGTTGCAGAACACTGTACAAAT
GCGGTCTGATGGCGCTACCTCTGGGAATGTTCGATGGCTTAATCAACCTT
TCACCCCTGGATCTGAGGCGCAACTCGCTGACGACGCTTCCTGCGGACAT
CTTCGTACCGCTGGTGTCTCTCAATACCCTGAGGCTCGCAGGCAACGGGA
TGGAGGGCTTGCAGTGCATCCCCGAGAGGTGGAACCAGTGCGTCGACTGG
CGTTAGAAAGCGAGATTTCCGCTGCGGGAAGCACAGTGGGTATTGATGCA
GACATCGGCCACATCCGACACTTTTTTTGGCTCCTGGATATTCTGTGGAG
AAGAACCACTATATCTTCACTGGCGTCTCTCCCTTCCTTCCCCACGTAA
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