mRNA_Ecto-sp13_S_contig9269.20859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9269.20859.1
Unique NamemRNA_Ecto-sp13_S_contig9269.20859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.350e-31
Identity = 87/226 (38.50%), Postives = 114/226 (50.44%), Query Frame = 1
Query:    1 MGIPKLLAACKEGASRDIVLGRGGPGSVIIIDGCFMLHRFVGDEGVAAALLPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGA----RERLKAATTAAERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRPPPWLLA 666
            MGI  L    K   S  + L        II+DG F+LHR       A  LL  DDV PL + C   V R     + V VV DG++PPAK+ T   RR  R+ A    RE  +      E +K    +   D +V+ARV+ L+     G +   AP EAD Q+V+F+   LET    ++YANDSDLIVLG R LLWD++ +    G L G  I   +I +PP W  A
Sbjct:    1 MGILSLSKHAKSVGSLSVNLQHAEHDDRIIVDGGFLLHRCCTRRTAARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAG-EVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGT--DAGNLTGVCIRSRLIFQPPEWAFA 223          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: A0A6H5KRU2_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.280e-29
Identity = 82/224 (36.61%), Postives = 118/224 (52.68%), Query Frame = 1
Query:    1 MGIPKLLAACKEGASRDIVLGR--GGPGSVIIIDGCFMLHRFVGDEGVAAALLPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGARE---RLKAATTAAER---DKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRP 648
            MG+  L    KE AS+ + L    G     +++DG F LH+  G  GVA  L+  D+V+PLA S    + +L    W + VVFDGA PP K  T  +R   R+  R+   RL+ +    +     KA   +V+    ++ARVS  VS +   C+ +TAP+EAD QL + E+       R  +  NDSDL+V+G R LLW++ S   + G L G+I   E I RP
Sbjct:    1 MGVNGLSPYLKEVASKRVPLDDEDGTRQKHLVVDGHFALHKAAGIGGVAVPLVLDDNVVPLAMSMATSLNKLASAGWGITVVFDGAPPPGKGATTRSRSSERERTRQQCLRLRESNVPLQHPGLQKAAVNAVAFTSHIVARVSRFVSRSL-RCECITAPYEADPQLRVLEEMYTCMGKRVLVRGNDSDLMVIGVRSLLWEVVS---EEGRLFGNIFTHEGITRP 220          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.520e-18
Identity = 64/182 (35.16%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  127 DEGVAAA-LLPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGARERLKAATTAA----ERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRPPPW 657
            + GVAAA LL  +DV      C + V+   D  + V VVFDG  PPAK GT   RR  R+ + ++ +A   A     E +K    + + D +V A ++  +     G +   AP EAD QLV+F+   L T    ++YANDSDL VLG R LL ++  +    G L+G  + + ++ +P  W
Sbjct:  248 ETGVAAANLLLNNDVSRQVEECAREVKLFEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGG-EVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNT--RGELIGRCVRQRLLFQPTAW 426          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.600e-17
Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  130 EGVAAA-LLPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGARERLKAATTAA----ERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRPPPW 657
             GVAAA LL  +DV      C + ++   D  + V VVFDG  PPAK GT   RR  R  + ++ +A   A     E +K    + + D +V A ++  +     G +   AP EAD QLV+F+   L T    ++YANDSDL VLG R LL ++  +    G LVG  + + ++ +P  W
Sbjct:    4 RGVAAANLLLNNDVSRQVEECARDMKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRG-EVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNA--RGELVGRCVRQRLLFQPTAW 181          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.380e-12
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  214 DFEWAVVVVFDGASPPAKEGTRVTRRRARDGARERLKAATTAA----ERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRPPPW 657
            D  + V VVFDG  PPAK GT   RR  R  + ++ +A   A     E +K    + + D +V A ++  +     G +   AP +AD QLV+F+   L T    ++YANDSDL VLG R  L ++  +    G LVG  + + ++ +P  W
Sbjct:    6 DRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRG-EVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNA--RGELVGRSVRQRLLFQPTAW 154          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-11
Identity = 56/155 (36.13%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  130 EGVAAA-LLPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGARERLKAATTAA----ERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDI 579
             GVAAA LL   DV      C + ++   D  + V VVFDG  PP K GT   RR  R  + ++ +A   A     E +K    + + + +V A ++        G +   AP EAD QLV+F+   L T    ++YANDSDL VLG R LL ++
Sbjct:    4 RGVAAANLLLNKDVSRQGEECARDMKLFEDHNFLVTVVFDGRPPPVKSGTSQHRRERRKKSAQQARALHDAGGCPVEINKLASAACAFNGRVTAEIATRSRALIRG-EVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEV 157          
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Match: A0A177EIP9_9MICR (Exonuclease 1 n=1 Tax=Nematocida displodere TaxID=1805483 RepID=A0A177EIP9_9MICR)

HSP 1 Score: 72.8 bits (177), Expect = 1.720e-11
Identity = 71/221 (32.13%), Postives = 101/221 (45.70%), Query Frame = 1
Query:    1 MGIPKLLAACKEGASRDIVLGRGGPGSVIIIDGCFMLHRFVGDEGVAAALLPADD--VLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRARDGARERLKAATTAAERDKATKLSVSLDEKVIARVSALVS-LNCCGCQTLTAPFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQHGLLVGSIIEREMILRPPP 654
            MGIP LL   KE      V   GG   V+ +DG   L++     GV   L P D   V    + C++  + L++    +  VFDG   P K  T   RR  +   R R+       ++ +A  L     +   A V  L++ L+  G Q +TAP+EAD QLV  E+  L      FI   DSDLIV G   +L+ +  +   HG   G + +RE IL+  P
Sbjct:    1 MGIPGLLPMLKEHLVYKPVEELGG--CVVGVDGFSWLYKAASVYGVDLYLNPGDKEVVRKYTQFCVRKCQALLEKGARLYFVFDGDDHPMKAETSRKRREKKAAIRSRIDDLQRKGKKREARALMSRCIKVDRAMVDNLITELDALGIQHITAPYEADPQLVCLEKDGLID----FIATEDSDLIVYGGNRILFKLNEA---HG---GELFDREQILQKCP 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9269.20859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE1.350e-3138.50Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KRU2_9PHAE2.280e-2936.61Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE7.520e-1835.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0K2_ECTSI4.600e-1735.36Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7G4G5_ECTSI2.380e-1234.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZG7_ECTSI1.540e-1136.13Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
A0A177EIP9_9MICR1.720e-1132.13Exonuclease 1 n=1 Tax=Nematocida displodere TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9269contigEcto-sp13_S_contig9269:1128..1793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7G0K2
Model size666
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
Cds size666
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.5602922-CDS-Ecto-sp13_S_contig9269:1127..17931681464197.5602922-CDS-Ecto-sp13_S_contig9269:1127..1793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9269 1128..1793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9269.20859.1prot_Ecto-sp13_S_contig9269.20859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9269 1128..1793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9269.20859.1

>prot_Ecto-sp13_S_contig9269.20859.1 ID=prot_Ecto-sp13_S_contig9269.20859.1|Name=mRNA_Ecto-sp13_S_contig9269.20859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MGIPKLLAACKEGASRDIVLGRGGPGSVIIIDGCFMLHRFVGDEGVAAAL
LPADDVLPLARSCIKLVRRLMDFEWAVVVVFDGASPPAKEGTRVTRRRAR
DGARERLKAATTAAERDKATKLSVSLDEKVIARVSALVSLNCCGCQTLTA
PFEADAQLVLFEQTLLETNDRTFIYANDSDLIVLGARCLLWDIKSSLDQH
GLLVGSIIEREMILRPPPWLLA
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mRNA from alignment at Ecto-sp13_S_contig9269:1128..1793-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9269.20859.1 ID=mRNA_Ecto-sp13_S_contig9269.20859.1|Name=mRNA_Ecto-sp13_S_contig9269.20859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9269:1128..1793- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTATCCCGAAACTCCTCGCAGCATGCAAGGAAGGGGCATCACGGGA TATCGTCCTAGGTCGAGGTGGTCCAGGAAGCGTCATTATCATCGACGGTT GTTTCATGCTCCATAGATTTGTGGGCGATGAAGGAGTTGCTGCTGCTCTC CTGCCCGCGGATGACGTCCTCCCACTCGCTAGGTCGTGTATCAAGCTCGT GCGGCGGTTGATGGACTTCGAGTGGGCGGTTGTGGTGGTGTTCGACGGAG CCTCCCCCCCAGCAAAGGAAGGTACTAGGGTTACGAGGAGACGGGCGAGG GATGGGGCTCGGGAACGTTTGAAGGCGGCGACAACAGCGGCGGAGCGAGA CAAGGCCACGAAACTGAGCGTATCTCTCGATGAAAAAGTCATTGCGAGAG TTTCCGCGTTGGTCAGTCTGAACTGTTGCGGGTGCCAGACGCTGACTGCT CCCTTCGAGGCCGACGCTCAACTGGTTTTATTCGAGCAAACACTGCTTGA GACAAACGACCGGACGTTCATCTATGCGAACGACTCGGATCTGATTGTCC TCGGTGCGCGTTGCCTGCTTTGGGACATCAAGAGCAGCCTGGACCAGCAT GGTTTATTAGTTGGGAGCATAATCGAGCGAGAGATGATTCTACGACCCCC GCCATGGTTGTTGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9269:1128..1793-

>mRNA_Ecto-sp13_S_contig9269.20859.1 ID=mRNA_Ecto-sp13_S_contig9269.20859.1|Name=mRNA_Ecto-sp13_S_contig9269.20859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9269:1128..1793- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTATCCCGAAACTCCTCGCAGCATGCAAGGAAGGGGCATCACGGGA
TATCGTCCTAGGTCGAGGTGGTCCAGGAAGCGTCATTATCATCGACGGTT
GTTTCATGCTCCATAGATTTGTGGGCGATGAAGGAGTTGCTGCTGCTCTC
CTGCCCGCGGATGACGTCCTCCCACTCGCTAGGTCGTGTATCAAGCTCGT
GCGGCGGTTGATGGACTTCGAGTGGGCGGTTGTGGTGGTGTTCGACGGAG
CCTCCCCCCCAGCAAAGGAAGGTACTAGGGTTACGAGGAGACGGGCGAGG
GATGGGGCTCGGGAACGTTTGAAGGCGGCGACAACAGCGGCGGAGCGAGA
CAAGGCCACGAAACTGAGCGTATCTCTCGATGAAAAAGTCATTGCGAGAG
TTTCCGCGTTGGTCAGTCTGAACTGTTGCGGGTGCCAGACGCTGACTGCT
CCCTTCGAGGCCGACGCTCAACTGGTTTTATTCGAGCAAACACTGCTTGA
GACAAACGACCGGACGTTCATCTATGCGAACGACTCGGATCTGATTGTCC
TCGGTGCGCGTTGCCTGCTTTGGGACATCAAGAGCAGCCTGGACCAGCAT
GGTTTATTAGTTGGGAGCATAATCGAGCGAGAGATGATTCTACGACCCCC
GCCATGGTTGTTGGCA
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