mRNA_Ecto-sp13_S_contig12504.2085.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12504.2085.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE) HSP 1 Score: 861 bits (2225), Expect = 4.500e-301 Identity = 672/901 (74.58%), Postives = 690/901 (76.58%), Query Frame = 1
Query: 1 MQEQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAIPASPAANGNAAFVPPSSATTLGGDLRDATATLPGGRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGRXXXXXXXXXXXXXXXXXXXXXXXXX--VCSAGIGSMSLGGFRSVGGGPFQDRAPLSPQVASGDDRSSARRQGRGGGRTPGPTRGPRYPLEDSTLVNNSGALGGGAESEGMXXXXXEGFSHXXXXXXXXXXXXXXXXXXXXXHLPLAYEGYGXXXXXXXXPYEQRGDASSXXXXXXXXXXXXXXGELFAHPHDQRLQRVGGGSGAGGVGRQAPRRGAXXXXXXXXXRSKGGLPRPGSNGDMAELRRSFDSGLAAAAGGHQLPSMATEKPPPGAAAEGNAVHGGSSTAGPPLDNWGILQYGLTLEDPVAAHGSDAPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--RGSGRLGDRGASXXXXXXXXMMMGSLSIGGDQSASGQRYGGRNELGRGXXXXXXXXXXXXXXXXXXXXGVVFADDYDLVGPXXXXXXXSFGFLDTPPPSNYEPGQDDRAPLQQHQNQPQQXXXRQQST---APLTPLLPRRGVGGSPSLTPQRRRLPHDIGGVPASGAAAATGGGEG---------------------------------------GNVTAMNTDHLHGSGSNGAAGGGAPLASGLLRWSFPPPGMSGHPGGVTGEGDGAGGGPIPSGLGRLNGXXXXXXXXXPAGDVGXXXXXXXXXXXRREGQHWSSTVQPVAAEYGVSRRLDYGEGGGIGEDQRGGDAGGARDMRGGGRXXXXXXXXXXXXXXXXSVDSHQYALLRGQRRELE 2565
MQEQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAIPASPAANGNAAFVPP+SATTLGGD RDATA LP RCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGRXXXXXXXXXXXXXXXXXXXXXXXXX VCSAGIGSMSLGGFRSVGGGP QDRAPLS Q ASGDDRSS RRQGRGGGRTPGPTR PRYPLEDSTL +NSGALGGGAESEGM XXXX XXXXXXXXXXXXXXXX H PLA+EGYG YEQRGDASS GE FAHPHDQRLQR GG GVGRQA R+GA XXXXXXXXRS+GGLPR GSNGDMAELRRSFDSGLA A GGHQLPSMATE+ PPGAAAEGN VHGGSSTAGPP+DNWGILQ+GLTLEDPVA HGS+APP XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX XXXXXX RGSGRLGDRGASXXXXXXXX XXXXXXXXXXXXXXXXXXXX XXXXXXXSFGFLDTPPPSNYEPG DDRAPLQQ Q+ XXX APL P+LPRRGVGGSPSLTPQRRRLPHD+GG P SG+AA +GGG G GNVTAM+TDHLHGSGSNGA GGGAPLASGLLRWSFPPPG+S HPGGVTGEGDGAGGGP+PSGLGRLNG AGDVG R EGQHWSST+QPVAAEYGVSRRLDYGEGGGIGEDQ GGD G ARDMRGGGR SVDSHQYALLRGQRRELE
Sbjct: 1 MQEQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAIPASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXVCSAGIGSMSLGGFRSVGGGPLQDRAPLSHQAASGDDRSSTRRQGRGGGRTPGPTRDPRYPLEDSTLGHNSGALGGGAESEGMMXXXXXXXXXXXXXXXXXXXXXXXXXIPGGHH-PLAFEGYGRGGGIV---YEQRGDASSYSSRSAAGCAGGSGGEPFAHPHDQRLQRGSGGXXXXGVGRQAARKGADXXXXXXXXRSEGGLPRLGSNGDMAELRRSFDSGLAVA-GGHQLPSMATERTPPGAAAEGNVVHGGSSTAGPPVDNWGILQFGLTLEDPVAGHGSNAPPXXXXXXXXXXXXXXXXXXXMEXXXXXXXXXXXXXXXXXFXXXXXXXXXRGSGRLGDRGASXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGFLDTPPPSNYEPGHDDRAPLQQQQHXXXXXXXXXXXXXXXAPLAPILPRRGVGGSPSLTPQRRRLPHDVGGFPVSGSAATSGGGGGNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGNVTAMSTDHLHGSGSNGALGGGAPLASGLLRWSFPPPGVSEHPGGVTGEGDGAGGGPVPSGLGRLNGFGALSGVSVSAGDVGGGGGDERSGGERGEGQHWSSTLQPVAAEYGVSRRLDYGEGGGIGEDQGGGDTG-ARDMRGGGRGRGGRGGGLSG-----SVDSHQYALLRGQRRELE 883
BLAST of mRNA_Ecto-sp13_S_contig12504.2085.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI) HSP 1 Score: 835 bits (2158), Expect = 3.950e-286 Identity = 605/860 (70.35%), Postives = 619/860 (71.98%), Query Frame = 1
Query: 1 MQEQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAIPASPAANGNAAFVPPSSATTLGGDLRDATATLPGGRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGRXXXXXXXXXXXXXXXXXXXXXXXXX--VCSAGIGSMSLGGFRSVGGGPFQDRAPLSPQVASGDDRSSARRQGRGGGRTPGPTRGPRYPLEDSTLVNNSGALGGGAESEGMXXXXXEGFSHXXXXXXXXXXXXXXXXXXXXXHLPLAYEGYGXXXXXXXXPYEQRGDASSXXXXXXXXXXXXXXGELFAHPHDQRLQRVGGGSGAGGVGRQAPRRGAXXXXXXXXXRSKGGLPRPGSNGDMAELRRSFDSGLAAAAGGHQLPSMATEKPPPGAAAEGNAVHGGSSTAGPPLDNWGILQYGLTLEDPVAAHGSDAPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGSGRLGDRGASXXXXXXXXMMMGSLSIGGDQSASGQRYGGRNELGRGXXXXXXXXXXXXXXXXXXXXGVVFADDYDLVGPXXXXXXXSFGFLDTPPPSNYEPGQDDRAPLQQHQNQPQQXXXRQQSTAPLTPLLPRRGVGGSPSLTPQRRRLPHDIGGVPASGAAAATGGGEGGNVTAMNTDHLHGSGSNGAAGGGAPLASGLLRWSFPPPGMSGHPGGVTGEGDGAGGGPIPSGLGRLNGXXXXXXXXXPAGDVGXXXXXXXXXXXRREGQHWSSTVQPVAAEYGVSRRLDYGEGGGIGEDQRGGDAGGARDMRGGGRXXXXXXXXXXXXXXXXSVDSHQYALLRGQRRELEVRG 2574
MQEQHQ GGDASADKEVMAILSSP QQKKFVVKPQPRPGGA PASPAANGNAAFVPPSS LG DLRD TA LPGGRCGAVEAVVGGGXXXXX GLPKPSSASWDPHVQSSSSAFSVPAGR XXXXXXXXXXXXXXXXX VCSAGIGS+SLGGFRSVGGGPFQDRAPLS Q ASGDDRSS RRQGRGGGRTPGPTRGPRYPLEDSTL +NSGALGGGAE+EGM E FSH XXXXXXXXXXXXXX HLPLAYEGYGXXXXXXX YEQRGDASS XXXXXXXXGE FAH HDQRL R + XXXXXXXXXRS+GGLPRPGSNGD+ LRRSFDSGLAAAAGGHQLPSMATEKPPPGAAAEGNAVHGGSSTAGPP+DNWGILQYGLTLEDPVA HGSDAP S XXXXXXX RGSGRLG +GAS XXX MMMGSLSI GDQSA+GQRYG NELGRG GV FADDYDLVGP XXXX FLD XXX Q STAP TPL PRRGVGGSPSLTPQ RRLPHD+GG PASGA+AAT NVTAM+TDHLHGSGSNGA GGGAPLASGLLRWSFPPPGM GHPGGVTGEGDGAGGGP+PSGLGRL XXXXXXXXX AGDVG R EGQHWSSTVQPVAAEYGVSRRLDYGEGGGIGE+Q AG ARD RGG XXX SVDSHQYALLRGQRRELE RG
Sbjct: 1 MQEQHQQXXXGGDASADKEVMAILSSPAQQKKFVVKPQPRPGGAFPASPAANGNAAFVPPSSVAALGSDLRDTTAALPGGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSVPAGRGGGGGRAEXXXXXXXXXXXXXXXXXXXVCSAGIGSLSLGGFRSVGGGPFQDRAPLSHQAASGDDRSSTRRQGRGGGRTPGPTRGPRYPLEDSTLGHNSGALGGGAETEGMMMQSSEDFSHSXXXXXXXXXXXXXXVIPGGLHLPLAYEGYGXXXXXXXA-YEQRGDASSYGSRSAXXXXXXXXGEPFAHAHDQRLHRGXXXXXXXXXXQXXXXXXXXXXXXXXXXRSEGGLPRPGSNGDVTGLRRSFDSGLAAAAGGHQLPSMATEKPPPGAAAEGNAVHGGSSTAGPPVDNWGILQYGLTLEDPVAGHGSDAP-SAAAADGSQRQQRLSEKMDSAGRSTAAEGRGGGGGQFSXXXXXXXXRGSGRLGGQGASSXXXASVAMMMGSLSIAGDQSAAGQRYGAGNELGRGGGGGGQPED-----------GVNFADDYDLVGPPDGXXXXXXXFLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-STAPRTPLHPRRGVGGSPSLTPQPRRLPHDVGGFPASGASAATXXXXXXNVTAMSTDHLHGSGSNGAVGGGAPLASGLLRWSFPPPGMPGHPGGVTGEGDGAGGGPMPSGLGRLXXXXXXXXXXXXAGDVGGGGGDERSGGERGEGQHWSSTVQPVAAEYGVSRRLDYGEGGGIGEEQXXXXAG-ARDRRGG--------XXXRGGGLSGSVDSHQYALLRGQRRELEYRG 837 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12504.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12504.2085.1 >prot_Ecto-sp13_S_contig12504.2085.1 ID=prot_Ecto-sp13_S_contig12504.2085.1|Name=mRNA_Ecto-sp13_S_contig12504.2085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=858bp MQEQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAIPASPAback to top mRNA from alignment at Ecto-sp13_S_contig12504:380..3696- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12504.2085.1 ID=mRNA_Ecto-sp13_S_contig12504.2085.1|Name=mRNA_Ecto-sp13_S_contig12504.2085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12504:380..3696- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12504:380..3696- >mRNA_Ecto-sp13_S_contig12504.2085.1 ID=mRNA_Ecto-sp13_S_contig12504.2085.1|Name=mRNA_Ecto-sp13_S_contig12504.2085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12504:380..3696- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |