mRNA_Ecto-sp13_S_contig12503.2084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12503.2084.1
Unique NamemRNA_Ecto-sp13_S_contig12503.2084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12503.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12503contigEcto-sp13_S_contig12503:2879..3360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size482
Hectar predicted targeting categorysignal peptide
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.2143774-UTR-Ecto-sp13_S_contig12503:2878..29441681462667.2143774-UTR-Ecto-sp13_S_contig12503:2878..2944Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12503 2879..2944 +
1681462667.2333598-UTR-Ecto-sp13_S_contig12503:3322..33601681462667.2333598-UTR-Ecto-sp13_S_contig12503:3322..3360Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12503 3323..3360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.224946-CDS-Ecto-sp13_S_contig12503:2944..33221681462667.224946-CDS-Ecto-sp13_S_contig12503:2944..3322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12503 2945..3322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12503.2084.1prot_Ecto-sp13_S_contig12503.2084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12503 2945..3322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12503.2084.1

>prot_Ecto-sp13_S_contig12503.2084.1 ID=prot_Ecto-sp13_S_contig12503.2084.1|Name=mRNA_Ecto-sp13_S_contig12503.2084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MRGILKSRVDTLLLLLCAISPFHVQPMHTRTSLTPFLCSKGLPHPSDSPL
ARPPYRHVTDHTSVLCVMENSRITFFAQPQAATNPVAGFSGSPRTGLRCK
MHRRTRIMCRSSLYLCVGTPSAPFL*
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mRNA from alignment at Ecto-sp13_S_contig12503:2879..3360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12503.2084.1 ID=mRNA_Ecto-sp13_S_contig12503.2084.1|Name=mRNA_Ecto-sp13_S_contig12503.2084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12503:2879..3360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTACATTCGAGACTTTCCCCATTTGACTTTCCCGCGTCTTCTCACCAA
CGGAATACCAGCGGAAATGCGCGGAATACTGAAGTCCCGAGTAGATACAC
TTCTGCTGCTGTTGTGTGCCATCTCGCCCTTTCACGTTCAACCCATGCAT
ACACGCACTTCACTAACTCCATTTCTTTGCAGCAAAGGCTTGCCACACCC
GTCTGACTCTCCACTTGCCAGACCTCCGTATCGGCACGTCACAGATCACA
CAAGCGTCCTTTGCGTCATGGAAAACAGCAGGATCACGTTCTTCGCGCAG
CCGCAGGCGGCAACCAATCCTGTAGCTGGATTTTCTGGGTCTCCCCGAAC
TGGGCTCCGGTGCAAAATGCATAGGCGTACAAGAATAATGTGCCGATCTT
CATTGTATCTGTGCGTAGGTACTCCGAGTGCTCCATTTCTGTAGGGTACA
AGAACACCATCCTCAGCCCCGGCCCACCGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12503:2879..3360+

>mRNA_Ecto-sp13_S_contig12503.2084.1 ID=mRNA_Ecto-sp13_S_contig12503.2084.1|Name=mRNA_Ecto-sp13_S_contig12503.2084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12503:2879..3360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGGAATACTGAAGTCCCGAGTAGATACACTTCTGCTGCTGTTGTG
TGCCATCTCGCCCTTTCACGTTCAACCCATGCATACACGCACTTCACTAA
CTCCATTTCTTTGCAGCAAAGGCTTGCCACACCCGTCTGACTCTCCACTT
GCCAGACCTCCGTATCGGCACGTCACAGATCACACAAGCGTCCTTTGCGT
CATGGAAAACAGCAGGATCACGTTCTTCGCGCAGCCGCAGGCGGCAACCA
ATCCTGTAGCTGGATTTTCTGGGTCTCCCCGAACTGGGCTCCGGTGCAAA
ATGCATAGGCGTACAAGAATAATGTGCCGATCTTCATTGTATCTGTGCGT
AGGTACTCCGAGTGCTCCATTTCTGTAG
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