mRNA_Ecto-sp13_S_contig12500.2083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12500.2083.1
Unique NamemRNA_Ecto-sp13_S_contig12500.2083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A097IU48_9PHAE (Pyruvate kinase n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A097IU48_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 9.250e-101
Identity = 152/162 (93.83%), Postives = 160/162 (98.77%), Query Frame = 1 
Query:    4 AQLLRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKET 489
            AQLLRGSN+SQDKIFT+CDESRRK KIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQAL TRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQ+LELTTDY+FLGD++KIACSY+SLPTSV+AGSKILVADGSLVLTVKECKET
Sbjct:    3 AQLLRGSNVSQDKIFTDCDESRRKCKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALYTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQDLELTTDYEFLGDSSKIACSYQSLPTSVQAGSKILVADGSLVLTVKECKET 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A097IU67_9PHAE (Pyruvate kinase n=6 Tax=Sargassum TaxID=3015 RepID=A0A097IU67_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 1.160e-87
Identity = 137/165 (83.03%), Postives = 148/165 (89.70%), Query Frame = 1 
Query:    1 MAQLLRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANK--KSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKET 489
            MA LLRGSNISQD IF ECDESRR+VKIICTLGPACW VETLG L+DAGMNVAR NFSHG+HE HAATLQRLRQAL+TRRGKHVAV+LDTKGPEIRTGFLA+K  K  EL +GQ+LELTTDY+FLGD TKIACSYKSLPTSV  GSKILVADGSLVLTVK+  +T
Sbjct:    1 MAHLLRGSNISQDNIFAECDESRRRVKIICTLGPACWDVETLGKLIDAGMNVARFNFSHGNHESHAATLQRLRQALATRRGKHVAVMLDTKGPEIRTGFLADKETKKVELQKGQDLELTTDYEFLGDKTKIACSYKSLPTSVHPGSKILVADGSLVLTVKKILDT 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A097IU44_9PHAE (Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IU44_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 2.220e-81
Identity = 131/163 (80.37%), Postives = 142/163 (87.12%), Query Frame = 1 
Query:    1 MAQLLRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLAN-KKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKE 486
            MAQ+LRGSNISQ+ IFTE D SRRK KIICTLGPACWS ETLGAL+DAGMNVARLNFSHGDHE HAATL RLR AL +RR KHVAV+LDTKGPEIR+GF A+ KK  EL RGQELEL TDY+  GD TKIACSYKSLPTSVK GS+ILVADGSLVL VK+CK+
Sbjct:    1 MAQVLRGSNISQEDIFTEVDVSRRKTKIICTLGPACWSEETLGALIDAGMNVARLNFSHGDHETHAATLTRLRSALVSRRKKHVAVMLDTKGPEIRSGFFADGKKKVELKRGQELELVTDYEHKGDETKIACSYKSLPTSVKPGSRILVADGSLVLLVKKCKD 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A836CKC5_9STRA (Pyruvate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.270e-69
Identity = 116/158 (73.42%), Postives = 124/158 (78.48%), Query Frame = 1 
Query:   10 LLRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECK 483
            LLRGS I+ D IF E +   RK KIICTLGPACWSVE LG L+DAGMNVARLNFSHGDHEGHAATL RLRQALSTRRGKHV V+LDTKGPEIRTGFL       L RGQ+LE+ TDY F G+   IACSY SLP SV+ G  ILVADGSLVL VKE K
Sbjct:    7 LLRGSGITLDTIFHETNVITRKTKIICTLGPACWSVEKLGCLIDAGMNVARLNFSHGDHEGHAATLLRLRQALSTRRGKHVGVMLDTKGPEIRTGFLEGGGPIFLERGQDLEIVTDYSFKGNKNCIACSYASLPASVQVGGSILVADGSLVLKVKEIK 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A2D4BV79_PYTIN (Pyruvate kinase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BV79_PYTIN)

HSP 1 Score: 211 bits (536), Expect = 2.000e-63
Identity = 104/158 (65.82%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:   13 LRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKE 486
            LR   +  D I    DES RK KI+CTLGP+CWS ETLG L+DAGMN+ARLNFSHGDH  HA TL RLR AL++R  K+VAV+LDTKGPEIRTGFL NK    + +G  +E TTDYD LGD TKIACSYK LP SV  G K+LVADGSLV TV E +E
Sbjct:    7 LRQQGVELDSIMRSFDESTRKTKIVCTLGPSCWSQETLGQLIDAGMNIARLNFSHGDHATHAETLSRLRGALASRPHKNVAVVLDTKGPEIRTGFLKNKDKVTIAKGSLVEWTTDYDLLGDETKIACSYKELPQSVSVGGKMLVADGSLVFTVVEVRE 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A485L8Q7_9STRA (Pyruvate kinase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8Q7_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.040e-63
Identity = 106/160 (66.25%), Postives = 121/160 (75.62%), Query Frame = 1 
Query:   13 LRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANK-KSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKET 489
            LRG  +    I    D   R+ KI+CT+GPACWSVE LG L+DAGMNVARLNFSHGDH+GH  TL RLRQA++TR  K VAV+LDTKGPEIRTGFL+   K   + + Q +ELTTDYDFLGD  KIACSY+ LP SVK GS ILVADGSLVLTV E +ET
Sbjct:    7 LRGERMELQHIMGSTDGITRRTKIVCTIGPACWSVEQLGQLIDAGMNVARLNFSHGDHKGHGETLTRLRQAIATRPHKQVAVMLDTKGPEIRTGFLSTPDKKISIKKDQIIELTTDYDFLGDENKIACSYEDLPISVKVGSPILVADGSLVLTVTEVRET 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A662WS39_9STRA (Pyruvate kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS39_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.020e-61
Identity = 103/157 (65.61%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:   16 RGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECKE 486
            R   +  D I    D  +RK KI CTLGPACW+ E LG L+DAGMNVAR NFSHGDHE HA TL RLR AL++R  K++A++LDTKGPEIRTGFLANK    + +G  LELTTDY+FLGD TKIACSY  LP SVK G  ILVADGSLVLTV E K+
Sbjct:   16 RCGGVELDSIMKSTDGVQRKTKIFCTLGPACWTQEGLGELIDAGMNVARFNFSHGDHESHADTLTRLRGALASRPHKNIAIMLDTKGPEIRTGFLANKDKVTIKKGALLELTTDYEFLGDETKIACSYPELPQSVKVGGPILVADGSLVLTVVEIKD 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A7R9Z595_9STRA (Pyruvate kinase (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z595_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.110e-60
Identity = 103/157 (65.61%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:   13 LRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECK 483
            LRGSNI+   I    D S R  KI+CTLGPACW V+ L  L+DAGM+VAR NFSHGDHEGH A L RLR A S  +G HVAV+LDTKGPEIR+GF A  K  +L +G+ + LTTDY F GD  K+ACSY SLPTSVK G +ILVADGSLVLTV ECK
Sbjct:   50 LRGSNITLSSITAPTDVSTRHTKIVCTLGPACWEVKQLERLIDAGMSVARFNFSHGDHEGHKACLDRLRTAASN-KGAHVAVMLDTKGPEIRSGFFAEGKKIDLVKGETITLTTDYAFKGDKRKLACSYPSLPTSVKQGQRILVADGSLVLTVLECK 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A7R9VWD7_9STRA (Pyruvate kinase n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9VWD7_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.130e-60
Identity = 103/157 (65.61%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:   13 LRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKECK 483
            LRGSNI+   I    D S R  KI+CTLGPACW V+ L  L+DAGM+VAR NFSHGDHEGH A L RLR A S  +G HVAV+LDTKGPEIR+GF A  K  +L +G+ + LTTDY F GD  K+ACSY SLPTSVK G +ILVADGSLVLTV ECK
Sbjct:   50 LRGSNITLSSITAPTDVSTRHTKIVCTLGPACWEVKQLERLIDAGMSVARFNFSHGDHEGHKACLDRLRTAASN-KGAHVAVMLDTKGPEIRSGFFAEGKKIDLVKGETITLTTDYAFKGDKRKLACSYPSLPTSVKQGQRILVADGSLVLTVLECK 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Match: A0A7S2E4K8_9STRA (Pyruvate kinase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E4K8_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.290e-60
Identity = 100/157 (63.69%), Postives = 118/157 (75.16%), Query Frame = 1 
Query:   13 LRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFLANKKS-AELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVADGSLVLTVKEC 480
            LRGSNI+ D I +  DE+ R  KI+CTLGPACW VE L  L++AG++VAR NFSHGDH+GH A L RLR A    +GKHVAV+LDTKGPEIR+GF AN  +   L++G+ L LTTDY + GD  KIACSY +LPTSV  G KILVADGSLVLTV  C
Sbjct:   12 LRGSNINLDSITSPTDENNRHTKIVCTLGPACWKVEQLEDLIEAGLSVARFNFSHGDHDGHKACLDRLRTAAKN-KGKHVAVMLDTKGPEIRSGFFANDANKVSLSKGETLTLTTDYTYRGDKHKIACSYPALPTSVTPGQKILVADGSLVLTVLSC 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12500.2083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IU48_9PHAE9.250e-10193.83Pyruvate kinase n=10 Tax=Phaeophyceae TaxID=2870 R... [more]
A0A097IU67_9PHAE1.160e-8783.03Pyruvate kinase n=6 Tax=Sargassum TaxID=3015 RepID... [more]
A0A097IU44_9PHAE2.220e-8180.37Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxI... [more]
A0A836CKC5_9STRA3.270e-6973.42Pyruvate kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A2D4BV79_PYTIN2.000e-6365.82Pyruvate kinase n=2 Tax=Pythium TaxID=4797 RepID=A... [more]
A0A485L8Q7_9STRA4.040e-6366.25Pyruvate kinase n=5 Tax=Aphanomyces TaxID=100860 R... [more]
A0A662WS39_9STRA1.020e-6165.61Pyruvate kinase n=2 Tax=Nothophytophthora sp. Chil... [more]
A0A7R9Z595_9STRA1.110e-6065.61Pyruvate kinase (Fragment) n=2 Tax=Pseudictyota du... [more]
A0A7R9VWD7_9STRA1.130e-6065.61Pyruvate kinase n=3 Tax=Odontellaceae TaxID=274990... [more]
A0A7S2E4K8_9STRA1.290e-6063.69Pyruvate kinase (Fragment) n=1 Tax=Ditylum brightw... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12500contigEcto-sp13_S_contig12500:275..4497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score323.9
Seed ortholog evalue4.2e-86
Seed eggNOG ortholog2880.D7FYR2
Preferred namePYK
Model size492
KEGG rclassRC00002,RC00015
KEGG koko:K00873
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.pyruvate kinase activity
EggNOG OGsCOG0469@1,KOG2323@2759
EC2.7.1.40
Cds size492
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.1499097-CDS-Ecto-sp13_S_contig12500:274..3821681462667.1499097-CDS-Ecto-sp13_S_contig12500:274..382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12500 275..382 -
1681462667.1630833-CDS-Ecto-sp13_S_contig12500:1253..13641681462667.1630833-CDS-Ecto-sp13_S_contig12500:1253..1364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12500 1254..1364 -
1681462667.1751192-CDS-Ecto-sp13_S_contig12500:1955..21961681462667.1751192-CDS-Ecto-sp13_S_contig12500:1955..2196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12500 1956..2196 -
1681462667.1839235-CDS-Ecto-sp13_S_contig12500:4465..44971681462667.1839235-CDS-Ecto-sp13_S_contig12500:4465..4497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12500 4466..4497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12500.2083.1prot_Ecto-sp13_S_contig12500.2083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12500 275..4497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12500.2083.1

>prot_Ecto-sp13_S_contig12500.2083.1 ID=prot_Ecto-sp13_S_contig12500.2083.1|Name=mRNA_Ecto-sp13_S_contig12500.2083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MAQLLRGSNISQDKIFTECDESRRKVKIICTLGPACWSVETLGALVDAGM
NVARLNFSHGDHEGHAATLQRLRQALSTRRGKHVAVLLDTKGPEIRTGFL
ANKKSAELTRGQELELTTDYDFLGDNTKIACSYKSLPTSVKAGSKILVAD
GSLVLTVKECKET*
back to top

mRNA from alignment at Ecto-sp13_S_contig12500:275..4497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12500.2083.1 ID=mRNA_Ecto-sp13_S_contig12500.2083.1|Name=mRNA_Ecto-sp13_S_contig12500.2083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12500:275..4497- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCAACTGCTTCGCGGGTCCAACATCAGGTGAGCGCTGGGCAGCAG
CAGCAGCAGCAGCAGGCGGCGTGCTTATTGTGCGAGACAGAAAGGTTGGC
CGGGAGATTCGACAACGGGAGAGCGACGCGTGATGAGTGTAATTTCGTTG
TCCATGGCGCGCATGCCCTCCCCACACACCGCCGTCGAGGGGGTGTGCTG
CCGCCGCTTGGCGTGCTCGCACCCCGCACAGACGGGTACCTGCGGCAGGT
GTCCTGTAGTGCTTGCGTGATTATGGGCTGGCTGCTGTGGGGATCCAGGA
AACGGAAAGAGGTTGTTGTGCTGCGTGCGAAGGAAACTCGAGTTGTTCAC
GCACAAGGGTGGAAGCGCAAGGGTAGAACTCGCCGCCTGTGCATAGCCCC
CCCGGTATGCGCAAACTCTCTCGAAGTGCCGATGCATCCGCCCGCACTGC
TGTTAGTGCAGCAGCGTAGGTGCGACATTGTAGCTGGACTCGCACCACCT
GCTGTCGCATGCCTCTGTTGCAAGGCGGTTCCACCACCCGAGCGTCGGAG
CTAACAAAAGCACATCTTATCTCAGCCGGTGTGTTTTGATTGGTCCCTCT
CTCTCTTGTAGCAAGGCTTCTGTTCGACGTCAACCATTGCACACGGTCTG
GTACACCTCAATTGGTAGAACTAGTTTGTTGCATGTTCTGCTCGTGCACT
TTCTTGACACCTTCCGTTCTACACTTGCAAGCGAGAGAGAGGGAGAGAGA
GAGCACCACCCCTTGCAGATCATAGCACACCGTACAGCCTAGTAGTCCAT
TGTGCATTTTGTGCGTGCGATTTCGAGGAGATTCAAGTCGGGTGACGCGC
TGACGTACATGTCCTTGTCAGCACGCGTCACCTGTTGCGGAGAATTTCAA
TCAAATTCGCGAACACAAGCCCAACAGAGCCTGTTCTACGGGATGGATAT
ACAGCAGTTATCGCCTTTGTTACTCTTATGAATTTTTTGTTAGATGGCCA
ATTGTTGCCGTAATCGCTCCATTGGGAGAGCGAGATATGTAGGTTTATCC
GGTTTTTCGTTTTTTACAGCTTTCTCCACTGGACTGTCGGACATCTCCTT
TCTTCGAACTTTGAAGTATGTAACATTTCCCCCGCGCATTTGTATAATAC
AACTGGAGACCAAAAAAGTAGTTTTGCTACTGCCGGCATTTTCTGATGTC
AGCATTATCCCACACGCAACCCAGTCGCCGTGATGAATGGGCCGAAAACA
CACACACCACCAGTTGATTCACGGAGAGAAGCACGGCCGTAAGCCAGCTG
TCTTCTTGCACAAGACGAATCATATCTCACGTACACAGCTTGGCCGGTCG
CACCCCCCTTCTCTGTAGGTAGTTATTTGCCTACCCACCAAGTTGCGTCT
CCGTCTTGAATTGATCCTGTGGCAAACGTGGCCGTTGTATGGAAGCGCAT
TCGTGTATTTGTGTGTGCAAGCTTCAGTACAACTTCAACTTCGCAAGAGA
GGGCTGCACCCATACAAAAGGAGCAGAGCGTCGATTCCTCGGTCCTACAT
ATGCGTACTCCAACCGGTAATATCGTCGTCTACTTCACGTACGTCGGTCG
GGAGCAAGACGAGAGTAACCGGCACTTGGCACACGTGTCGCTACTGCTGC
TGCACAGGAGCAGTACAACACAGCAGCAGCTGTCCCTTCATGAACGGCTG
GTCCACTGTATGTAGCTTGACAGGCTGTCGCTGTGTGTAGGATACCCTCA
ACAGACAGGTTCCGGGTGCCCAGTAGAGGGCCGGCCATTCCCTTGACACT
ACTACGCGGGCAAAAAGGACCAAATAAATACTGCTGTCATTGTTTATCCC
ATGAAAGTGTTGCCCGTGTTTCAAAGTGATTTACCTGTGTGAGCTACACT
GCTGTGCGTTTAATATTTCTTGATTTTGTATGTATGCATGGCAGTTTTTG
AAGTTAAGAAATTTCAAACGTGCACGTAATCAAAAGACGACGACGCCACT
GGTATCTTAACCCTCGGTCTCTCTCTGCTTGCTGTATCTCTTTCTCTGGA
ACTTGATTTCCTCTCTCATCACTTCGGCCGGCTACGCCTCTCTTCACGAC
AAACACCCTGACCGAACGCCCCCGACTGCGTCCGTTATCCAGCATGTTCA
CTTGAACTTGAATAGACTAACCCTTCGCCTTCGAAGGCTATCGAGAAAAG
AAAAAACCGTACGGGTCGAAGCTTTCTAACAAGTTTACTAATGTTTCATT
TGGACGAAAACACATTTCTCTCGCTGATGCTTTTGTATCATCCGCATGCA
GCCAAGACAAGATCTTCACCGAGTGCGATGAGTCCCGCCGCAAAGTCAAG
ATCATCTGCACCCTCGGCCCCGCCTGCTGGAGCGTGGAGACCCTGGGCGC
GCTAGTGGACGCGGGCATGAACGTGGCCCGCCTCAACTTCTCCCACGGGG
ACCACGAGGGGCACGCTGCCACCCTCCAGCGCCTCCGCCAGGCCCTGTCC
ACCCGCCGGGGGAAGCACGTGGCCGTCCTCCTCGACACCAAGGTGTGCTG
CTGCTACTGCGGCTGCTGCTGCTGCTGCTGCTGCAGGAGTTGCAGAGGGT
GATGCTGCCTTGCTGCGGGAGTTGTAAGAAGGCTTATTATCAGTTTGGTA
CATGTAAGCGTTCGAGGCGAAAGTGTGGTGGTGGTGCTGCTGCTGCGGCT
GCTGCAGGAGTTTTAGAGGGTGATGTTGTTTCTGCTGCTTGGCTGCAGAA
GTTGTTGAGACTGATGTTGCTGCTTTGCTGCTGGGGTTGTAAGGAGGTTA
TGATCAGTTTTGGCACATGCGTTCAGTGGCTGGCTGTTCCGACGCTGTTG
CTCGCGTTGGTGTTGACGCCCGCGGAGCCGTGAGGAAAGGGCGGTGGTGG
CTGGCCGAAATGCACGCCGGCACCGCTACGAGGGGTCTTCTCAACCCTGT
TGACTTGTTTTTCGTGATGTTCTGGGTAATGCTCTACGGTTGTCTTTAAG
AGCAGCTCATGAAACATTTCTCATTCGTTTCTTTATCGCTGTGGTCCCTA
CGAGATAGCTGTTGTGAGTCAAAATACACCCAGGGACCTCAAGCCTGCTA
TCCCGGTCCCCTTCCTTGCCAAAACCGCCGCAGGGGCCCGAGATCCGAAC
GGGATTCCTCGCCAACAAGAAGTCGGCCGAGCTCACCAGGGGGCAAGAGC
TGGAGCTCACCACCGACTACGACTTCCTGGGAGACAACACTAAGGTAAAT
GTGCCTAGGTTCAACAAGTGATCCCCCGGGAGTGAGCTTTATGAGAGCAC
AGCAGCAGTGTCATGAAAAGGTGGTGCACCTTGAAACTACGAGCAGGGAG
CAGGACCGACCAACCGACCCACAGCTGCCTGGATGGCTGGCTTCCAGGCT
GCGGTGTGGCGTTAGGATTTCCAAGCTCACGAACGGCTGGCGTGTTTTTC
ACTCGAACGGCAGTCAAGCGAACGTCAAGGAAAAAATAAAAACAAGTTAC
AGATGTGCTGCGGTAATGGTCGGTGGGGAGCTTCGGAGTGTACTCGCCAT
TGGGAGGAGAGGGGGAGGGGGGGTGTACTCACGTCCACGCATGCCGTCCT
ATTCGGTACACCTCGCACCCCTACCATGCTGGGACGCAACGATATGCCGG
GTTTCCGTCGGCCGAGGATACGTTTCACAAGGATGAACCAGAAGCCGGTG
GGGGGTGATGTTTCCTAATAACCCTCAATCAACCCTTTGTTAATTGATGG
TTTGATCCCGGCTGGTGCGTAGAATTTTGCCGAAAGGTGGAGGCAGGCGC
CCAAAATAGGCAGGGACGGTTAAAGAACATGGCAAAATACGGAGTGTCCT
GTCTCGCGACACACCAGCCCTTTTTTCCCCGTGTTTCGTCGGGGCCAACC
CTTCCTCCTCCCTCCCTCCCACTCGCACCCTCCTCTCCGCGATACGCCCC
TTCTCGTCGCGTGAATCGATCCCCCATACCGACTCAACACAACACTAGCA
ACGGTTACAACGGGGGCGATCCGCATCCTTTCCTATCCTTGTCCGACCAA
CGCAACACTACCAACGTACTAACAACGGTGACCTATCCTGTCCTATTCTT
GTCCGTTCCGAATAGATCGCGTGCTCGTACAAGTCGTTGCCGACCAGCGT
CAAGGCCGGCAGCAAGATCTTGGTAGCCGACGGGTCTCTGGTGCTCACCG
TCAAGGAGTGCAAGGAGACGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12500:275..4497-

>mRNA_Ecto-sp13_S_contig12500.2083.1 ID=mRNA_Ecto-sp13_S_contig12500.2083.1|Name=mRNA_Ecto-sp13_S_contig12500.2083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12500:275..4497- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCAACTGCTTCGCGGGTCCAACATCAGCCAAGACAAGATCTTCAC
CGAGTGCGATGAGTCCCGCCGCAAAGTCAAGATCATCTGCACCCTCGGCC
CCGCCTGCTGGAGCGTGGAGACCCTGGGCGCGCTAGTGGACGCGGGCATG
AACGTGGCCCGCCTCAACTTCTCCCACGGGGACCACGAGGGGCACGCTGC
CACCCTCCAGCGCCTCCGCCAGGCCCTGTCCACCCGCCGGGGGAAGCACG
TGGCCGTCCTCCTCGACACCAAGGGGCCCGAGATCCGAACGGGATTCCTC
GCCAACAAGAAGTCGGCCGAGCTCACCAGGGGGCAAGAGCTGGAGCTCAC
CACCGACTACGACTTCCTGGGAGACAACACTAAGATCGCGTGCTCGTACA
AGTCGTTGCCGACCAGCGTCAAGGCCGGCAGCAAGATCTTGGTAGCCGAC
GGGTCTCTGGTGCTCACCGTCAAGGAGTGCAAGGAGACGTGA
back to top