prot_Ecto-sp13_S_contig1250.2082.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1250.2082.1
Unique Nameprot_Ecto-sp13_S_contig1250.2082.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length304
Homology
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: D7FK01_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK01_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 4.960e-153
Identity = 249/297 (83.84%), Postives = 258/297 (86.87%), Query Frame = 0
Query:    1 MELQAGNGGCLQGKVFGLTGELARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTANAPVSIPGASTFAGSNARAPNDAAAVSGEG-NSGSSTKEANTEGAPKGERKTATAEDGVDIVGDGCKGTRSRRRKELAQLESSGPEVARSGQPPGDDGGDAQKKKHKKRKNRGKDADSSIVSDAWPGSQRASTKGTERPKKTKKSKKHHLRTDVSGQDTTRAGQGQESGGLQKGDGEDIPSAHVGDAKLDKRERKKE 296
            M  QAGNGGCLQGKVFGLTGELARKEL+PMLKAHGATVS IIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQ FIAACALAGDVVDS  FRVVTTANAP SIPGAST AGSNA+APNDA AVS EG NSGSS KEANT G PKGERKTATAEDGVD  GDG KGTR RRRK+LAQLESSGPEVARS QPPGD G          RKNRGKDADSSIV+D  PGSQRASTKGTERPK+TKK KK+HLRTDV GQDTT AG+G ESG L++GDGEDIP A VGDAKLDKRERKKE
Sbjct:    1 MAPQAGNGGCLQGKVFGLTGELARKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQGFIAACALAGDVVDSTPFRVVTTANAPASIPGASTLAGSNAKAPNDATAVSVEGSNSGSSAKEANTVGTPKGERKTATAEDGVDTAGDGSKGTRRRRRKDLAQLESSGPEVARSEQPPGDGGXXXXXXXXXXRKNRGKDADSSIVADTCPGSQRASTKGTERPKETKKRKKNHLRTDVVGQDTTTAGKGPESGELRRGDGEDIPRAQVGDAKLDKRERKKE 297          
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A835Z7C4_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.860e-10
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 0
Query:   15 VFGLTGEL--ARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTAN 101
            +F +TG L  AR  LK ++  HG  VS I+H RVS+V+C  +AV  NTQ+VRKA +  IP+VS+ F+   A    ++D   + + + A+
Sbjct:  405 IFSVTGSLGAARSTLKALIGQHGGQVSNIVHSRVSYVVCNAEAVANNTQRVRKAARFAIPVVSEAFVVESAAQQKLLDWKPYALASGAS 493          
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A8J6C5R2_DIALT (BRCT domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5R2_DIALT)

HSP 1 Score: 65.5 bits (158), Expect = 2.020e-8
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   11 LQGKVFGLTGELARKE-LKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAAC 82
            L G +  LTG    ++ LK +L+A+G +  T++H RV++V+ T  AV++ TQ VRKA+K GIP+VS+ ++  C
Sbjct:  197 LPGTLVALTGRFDNRDGLKALLRANGISAVTLVHGRVNYVVATDRAVRFQTQHVRKAIKRGIPVVSEPWLRLC 269          
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A7R9UBX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBX5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.490e-6
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 0
Query:   21 ELARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRV 96
            E + +EL   ++  GA VS  +HK V  V+ T +A + NTQ++RKA K GIP+VS  F+  CA+    +D   F +
Sbjct:   22 ERSYEELCAEVRGLGARVSGTVHKGVDLVVATAEANRRNTQRIRKARKRGIPVVSLAFLEHCAVENKHLDPTGFAL 97          
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A7S3L5T7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5T7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.130e-5
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0
Query:   23 ARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVD 90
            A  ++  + K  GA  +  +HKRV+ V+ T  AV  NTQ+VRKA K GIP++S ++I AC   G  VD
Sbjct:   80 AYSQIISLCKDLGAQTTGQVHKRVNAVIATESAVTGNTQRVRKAWKKGIPVISPDWIHACIKKGRSVD 147          
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A2R5GL61_9STRA (Poly ADP-ribose polymerase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GL61_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.510e-5
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 0
Query:   26 ELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACA 83
            EL+ +++  G  +S I+HKRV  ++ +  AV+  +QKVRKA+K  +P+VS+ F+ ACA
Sbjct:  144 ELRTLIEDAGGKMSGILHKRVFALVASERAVRRRSQKVRKAVKFNVPVVSEAFLTACA 201          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FK01_ECTSI4.960e-15383.84BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7C4_9STRA2.860e-1040.45BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J6C5R2_DIALT2.020e-842.47BRCT domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7R9UBX5_9STRA4.490e-639.47Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3L5T7_9STRA2.130e-544.12Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A2R5GL61_9STRA6.510e-543.10Poly ADP-ribose polymerase 1 n=1 Tax=Hondaea ferme... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 8..86
e-value: 8.5E-8
score: 41.9
IPR001357BRCT domainPFAMPF00533BRCTcoord: 10..82
e-value: 2.1E-7
score: 31.2
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 11..96
score: 13.562
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 4..97
e-value: 7.9E-12
score: 47.0
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 8..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1250contigEcto-sp13_S_contig1250:12331..14740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1250.2082.1mRNA_Ecto-sp13_S_contig1250.2082.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1250 12136..14740 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1250.2082.1 ID=prot_Ecto-sp13_S_contig1250.2082.1|Name=mRNA_Ecto-sp13_S_contig1250.2082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MELQAGNGGCLQGKVFGLTGELARKELKPMLKAHGATVSTIIHKRVSFVL
CTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTA
NAPVSIPGASTFAGSNARAPNDAAAVSGEGNSGSSTKEANTEGAPKGERK
TATAEDGVDIVGDGCKGTRSRRRKELAQLESSGPEVARSGQPPGDDGGDA
QKKKHKKRKNRGKDADSSIVSDAWPGSQRASTKGTERPKKTKKSKKHHLR
TDVSGQDTTRAGQGQESGGLQKGDGEDIPSAHVGDAKLDKRERKKENKKR
WSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf