mRNA_Ecto-sp13_S_contig1250.2082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1250.2082.1
Unique NamemRNA_Ecto-sp13_S_contig1250.2082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: D7FK01_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK01_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 2.970e-152
Identity = 249/297 (83.84%), Postives = 258/297 (86.87%), Query Frame = 1 
Query:  196 MELQAGNGGCLQGKVFGLTGELARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTANAPVSIPGASTFAGSNARAPNDAAAVSGEG-NSGSSTKEANTEGAPKGERKTATAEDGVDIVGDGCKGTRSRRRKELAQLESSGPEVARSGQPPGDDGGDAQKKKHKKRKNRGKDADSSIVSDAWPGSQRASTKGTERPKKTKKSKKHHLRTDVSGQDTTRAGQGQESGGLQKGDGEDIPSAHVGDAKLDKRERKKE 1083
            M  QAGNGGCLQGKVFGLTGELARKEL+PMLKAHGATVS IIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQ FIAACALAGDVVDS  FRVVTTANAP SIPGAST AGSNA+APNDA AVS EG NSGSS KEANT G PKGERKTATAEDGVD  GDG KGTR RRRK+LAQLESSGPEVARS QPPGD G          RKNRGKDADSSIV+D  PGSQRASTKGTERPK+TKK KK+HLRTDV GQDTT AG+G ESG L++GDGEDIP A VGDAKLDKRERKKE
Sbjct:    1 MAPQAGNGGCLQGKVFGLTGELARKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQGFIAACALAGDVVDSTPFRVVTTANAPASIPGASTLAGSNAKAPNDATAVSVEGSNSGSSAKEANTVGTPKGERKTATAEDGVDTAGDGSKGTRRRRRKDLAQLESSGPEVARSEQPPGDGGXXXXXXXXXXRKNRGKDADSSIVADTCPGSQRASTKGTERPKETKKRKKNHLRTDVVGQDTTTAGKGPESGELRRGDGEDIPRAQVGDAKLDKRERKKE 297
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A835Z7C4_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.020e-10
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:  238 VFGLTGEL--ARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTAN 498
            +F +TG L  AR  LK ++  HG  VS I+H RVS+V+C  +AV  NTQ+VRKA +  IP+VS+ F+   A    ++D   + + + A+
Sbjct:  405 IFSVTGSLGAARSTLKALIGQHGGQVSNIVHSRVSYVVCNAEAVANNTQRVRKAARFAIPVVSEAFVVESAAQQKLLDWKPYALASGAS 493
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A8J6C5R2_DIALT (BRCT domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5R2_DIALT)

HSP 1 Score: 65.5 bits (158), Expect = 3.520e-8
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  226 LQGKVFGLTGELARKE-LKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAAC 441
            L G +  LTG    ++ LK +L+A+G +  T++H RV++V+ T  AV++ TQ VRKA+K GIP+VS+ ++  C
Sbjct:  197 LPGTLVALTGRFDNRDGLKALLRANGISAVTLVHGRVNYVVATDRAVRFQTQHVRKAIKRGIPVVSEPWLRLC 269
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A7R9UBX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBX5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.600e-6
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  208 AGNGGCLQGKVF----GLTG-ELARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRV 483
            A + G LQG+      G++  E + +EL   ++  GA VS  +HK V  V+ T +A + NTQ++RKA K GIP+VS  F+  CA+    +D   F +
Sbjct:    1 AMSAGPLQGRTVCVSTGISSTERSYEELCAEVRGLGARVSGTVHKGVDLVVATAEANRRNTQRIRKARKRGIPVVSLAFLEHCAVENKHLDPTGFAL 97
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A7S3L5T7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5T7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.150e-5
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  262 ARKELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVD 465
            A  ++  + K  GA  +  +HKRV+ V+ T  AV  NTQ+VRKA K GIP++S ++I AC   G  VD
Sbjct:   80 AYSQIISLCKDLGAQTTGQVHKRVNAVIATESAVTGNTQRVRKAWKKGIPVISPDWIHACIKKGRSVD 147
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BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Match: A0A2R5GL61_9STRA (Poly ADP-ribose polymerase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GL61_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.790e-5
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  271 ELKPMLKAHGATVSTIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQEFIAACA 444
            EL+ +++  G  +S I+HKRV  ++ +  AV+  +QKVRKA+K  +P+VS+ F+ ACA
Sbjct:  144 ELRTLIEDAGGKMSGILHKRVFALVASERAVRRRSQKVRKAVKFNVPVVSEAFLTACA 201
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1250.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FK01_ECTSI2.970e-15283.84BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7C4_9STRA8.020e-1040.45BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J6C5R2_DIALT3.520e-842.47BRCT domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7R9UBX5_9STRA3.600e-637.11Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3L5T7_9STRA3.150e-544.12Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A2R5GL61_9STRA9.790e-543.10Poly ADP-ribose polymerase 1 n=1 Tax=Hondaea ferme... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1250contigEcto-sp13_S_contig1250:12136..14740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score449.5
Seed ortholog evalue1.2e-123
Seed eggNOG ortholog2880.D7FK01
Model size1107
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.BRCA1 C Terminus (BRCT) domain
EggNOG OGs2EABY@1,2SGKA@2759
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-18_002980.1
Cds size912
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.0793288-UTR-Ecto-sp13_S_contig1250:12135..123301681462667.0793288-UTR-Ecto-sp13_S_contig1250:12135..12330Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1250 12136..12330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.0908902-CDS-Ecto-sp13_S_contig1250:12330..124411681462667.0908902-CDS-Ecto-sp13_S_contig1250:12330..12441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1250 12331..12441 +
1681462667.100411-CDS-Ecto-sp13_S_contig1250:13495..136121681462667.100411-CDS-Ecto-sp13_S_contig1250:13495..13612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1250 13496..13612 +
1681462667.1091194-CDS-Ecto-sp13_S_contig1250:14056..147401681462667.1091194-CDS-Ecto-sp13_S_contig1250:14056..14740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1250 14057..14740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1250.2082.1prot_Ecto-sp13_S_contig1250.2082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1250 12331..14740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1250.2082.1

>prot_Ecto-sp13_S_contig1250.2082.1 ID=prot_Ecto-sp13_S_contig1250.2082.1|Name=mRNA_Ecto-sp13_S_contig1250.2082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MELQAGNGGCLQGKVFGLTGELARKELKPMLKAHGATVSTIIHKRVSFVL
CTPDAVKYNTQKVRKALKHGIPLVSQEFIAACALAGDVVDSNSFRVVTTA
NAPVSIPGASTFAGSNARAPNDAAAVSGEGNSGSSTKEANTEGAPKGERK
TATAEDGVDIVGDGCKGTRSRRRKELAQLESSGPEVARSGQPPGDDGGDA
QKKKHKKRKNRGKDADSSIVSDAWPGSQRASTKGTERPKKTKKSKKHHLR
TDVSGQDTTRAGQGQESGGLQKGDGEDIPSAHVGDAKLDKRERKKENKKR
WSR*
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mRNA from alignment at Ecto-sp13_S_contig1250:12136..14740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1250.2082.1 ID=mRNA_Ecto-sp13_S_contig1250.2082.1|Name=mRNA_Ecto-sp13_S_contig1250.2082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1250:12136..14740+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAATACAGGCTGAGACGGCAAACAACGACGAAACACACGGAAAAACTT
TTTGAAAACTGGCGCCAAGGCAGATTGCGTTAAGTAAACCAGCACATGGA
CAGTAAAAGGCATCGAGTACCAACCTCGATACGTCTAGACAAGCAAGCCA
ACAATATTCAGGGTTAGGTGGCACATCTCCACGGTAGCCCTGCCCATGGA
GCTTCAAGCAGGCAACGGTGGCTGCTTGCAGGGGAAGGTGTTCGGGCTCA
CCGGAGAGCTGGCTAGAAAGGAACTCAAGCCCATGCTCAAGGCGCACGGG
GCGACGGTGAGTACCGGAGGCGGAGAAATGCTACCCCTCTCCTGTAGACC
GACTTTCAAAGCTCGATTGCTCCACAATCAAGAGGGGTGCGAAAGAGCCC
TCGACGAGATGTTTCCAAAACCAATGCTGTTGTTGGTGTTGTTGGCACAA
GCTTGGTTGTGGAGCAATGGAGCCTCGAAAATAGGCCTAAGGAGGGGAGG
GGCGTACTCTTGTGTTTTGGATGCCTTAGCGGTTAGAAAATTGACCACGC
GTCCTGGAGAGGATGGAGCATTGTTCCCACAGGACCGACCACCGATAGCC
AATTGTTCCTTCCTACGGTGCCAAAGATAGCCCAATAGTCTTCCCTACTC
TATCTATCCTATGGATACCACTTCCCGCCTTTTCAACCCACTTCCTACGC
CCCTGTTTGTACAGCTACCGTCTTCTCTTGGCTTTTCCATGCCTCAAACA
TCTCCCTGTACCTTCCTTTTATTTTTCCCAGCTCAGTCATGTGAACTTCC
CTCTCCTTCTTGTACAATGGACATTCCGCAACTACATGAACACAGTCTTC
GCTCTCTCGGAGCCGCAATCACATTTGAAGTTGTCGTCTTCATCGTCTAT
GTTCCTTAATCTTCGTGTACGTTCTCGAAGGCCAATGTTCCCCTCCTGAA
TTTGACCTTCAGCTTTGCCCCTGCATCCATTGGTCCATTTAGGTACTCCT
TGAATCCTGTTCCTTCTTTCAATATTCCGTACTCCTCTCGACCGTCCTTA
ACCTTGGCCAAGGGGGGGGCTTGGCATCTCTCCGCCTCACTATTCATACG
GTACTATATCTACTGTACATGCGGGTTTGACGAAGACGATATCTTGGTGT
GACAAGCACCGCTTACGCTTACCCGCATGCCCAGAAGGTACGGTGTACCA
GTTTTGAAATGTTGCTCTCCCGCGGTCGTTGGAACCGACAGCAATCAGTT
CCTTCCCTCGCTGTGCCGTACACTCCGCAGCCAAACAACCTTTGATTCCT
TCTTTGTCGCTTTTTTCCGAAAAAGCTTCCCGGCGAAACTTCCCTTCACG
TGCTAACCAGGTGTCGACCATCATCCACAAGCGGGTGTCTTTCGTGCTTT
GCACGCCTGACGCCGTCAAGTACAATACACAGAAGGTCCGGAAAGCTCTG
AAGCACGGGATCCCTCTCGTTTCACAGGTATAGAAGTGAGTGGGCGTGGT
ATCGAGAGCGAGTGTAAGGCGCGTGGATTCCAGTGGTTCCTTCGCCATGA
GGGGTTACGCTTAACGCTGATAGCGGACCTTCCCTCATGAACAGGCGTTC
CTTGAGTGCCATTTCTCGGGTAGCTGTCCTCTGACCGCAAGATAGAGAAA
CATTTCTTCCCCGAAGCTCTCCTGCTTGCCACAACAGAACATCCGTGCTG
CTAATCCTCGGGCTTGTGGTGCCAATAGTCGCTGTTCTGACCTATTCGAG
CGTGCTCACGCTTTTGCGCAATACATACCGTGAGAAAACGCTGTTGTCAC
CCCCCTCACCCGCCCCTATTTCGTCGGCAATGCCGCCGCCGCCTCCCGCC
GCTCTCTGGGGGTCGTTGCTATTGTCTGCGAACCGTCTGCTCTCTCCCGT
GCGTGCGTGCTCGGTGTGCAGGAGTTCATCGCGGCCTGCGCCCTTGCGGG
GGACGTGGTCGACTCGAACTCCTTTCGAGTCGTCACCACCGCGAACGCCC
CAGTGTCTATCCCAGGGGCTTCAACGTTCGCCGGAAGCAATGCCAGGGCA
CCCAATGATGCCGCCGCAGTGAGCGGAGAGGGTAACTCCGGCTCATCCAC
CAAAGAAGCGAACACCGAAGGGGCACCAAAGGGTGAAAGGAAGACGGCAA
CAGCAGAGGATGGCGTGGACATTGTCGGCGACGGTTGCAAGGGAACACGG
AGTCGGCGGCGGAAAGAGCTCGCGCAACTAGAATCATCAGGACCCGAAGT
TGCAAGGTCGGGACAACCACCCGGTGATGATGGTGGCGACGCCCAGAAGA
AGAAGCACAAGAAAAGAAAAAACAGAGGGAAGGATGCAGACAGCAGTATC
GTTTCCGATGCTTGGCCAGGTTCCCAACGAGCGAGCACGAAAGGGACCGA
ACGGCCAAAGAAGACGAAGAAGAGCAAGAAACACCACCTTAGAACAGATG
TTTCCGGCCAAGATACAACAAGGGCGGGACAAGGCCAGGAAAGTGGGGGG
CTTCAGAAAGGTGATGGCGAGGACATTCCAAGTGCCCATGTCGGCGATGC
GAAGTTGGACAAGAGAGAGCGGAAGAAGGAGAATAAGAAGCGGTGGAGCC
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1250:12136..14740+

>mRNA_Ecto-sp13_S_contig1250.2082.1 ID=mRNA_Ecto-sp13_S_contig1250.2082.1|Name=mRNA_Ecto-sp13_S_contig1250.2082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1250:12136..14740+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTTCAAGCAGGCAACGGTGGCTGCTTGCAGGGGAAGGTGTTCGG
GCTCACCGGAGAGCTGGCTAGAAAGGAACTCAAGCCCATGCTCAAGGCGC
ACGGGGCGACGGTGTCGACCATCATCCACAAGCGGGTGTCTTTCGTGCTT
TGCACGCCTGACGCCGTCAAGTACAATACACAGAAGGTCCGGAAAGCTCT
GAAGCACGGGATCCCTCTCGTTTCACAGGAGTTCATCGCGGCCTGCGCCC
TTGCGGGGGACGTGGTCGACTCGAACTCCTTTCGAGTCGTCACCACCGCG
AACGCCCCAGTGTCTATCCCAGGGGCTTCAACGTTCGCCGGAAGCAATGC
CAGGGCACCCAATGATGCCGCCGCAGTGAGCGGAGAGGGTAACTCCGGCT
CATCCACCAAAGAAGCGAACACCGAAGGGGCACCAAAGGGTGAAAGGAAG
ACGGCAACAGCAGAGGATGGCGTGGACATTGTCGGCGACGGTTGCAAGGG
AACACGGAGTCGGCGGCGGAAAGAGCTCGCGCAACTAGAATCATCAGGAC
CCGAAGTTGCAAGGTCGGGACAACCACCCGGTGATGATGGTGGCGACGCC
CAGAAGAAGAAGCACAAGAAAAGAAAAAACAGAGGGAAGGATGCAGACAG
CAGTATCGTTTCCGATGCTTGGCCAGGTTCCCAACGAGCGAGCACGAAAG
GGACCGAACGGCCAAAGAAGACGAAGAAGAGCAAGAAACACCACCTTAGA
ACAGATGTTTCCGGCCAAGATACAACAAGGGCGGGACAAGGCCAGGAAAG
TGGGGGGCTTCAGAAAGGTGATGGCGAGGACATTCCAAGTGCCCATGTCG
GCGATGCGAAGTTGGACAAGAGAGAGCGGAAGAAGGAGAATAAGAAGCGG
TGGAGCCGGTGA
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