mRNA_Ecto-sp13_S_contig9229.20806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9229.20806.1
Unique NamemRNA_Ecto-sp13_S_contig9229.20806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9229.20806.1 vs. uniprot
Match: D8LQK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 8.250e-39
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 VNGDWVDGEEGHHVAGETLTRTYNVTNKGTTTLSNVCVIDEKFGEDCLACVVSDNGKLPPGDSFVCA 201
            VNGDWVDGEEGHHVAGETLTRTYNVTN+GTTTLSNVCVIDEKFGEDCLACVVSDNGKLPPGDSFVC+
Sbjct:  251 VNGDWVDGEEGHHVAGETLTRTYNVTNRGTTTLSNVCVIDEKFGEDCLACVVSDNGKLPPGDSFVCS 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9229.20806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQK3_ECTSI8.250e-3997.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9229contigEcto-sp13_S_contig9229:4704..4904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.8811238-CDS-Ecto-sp13_S_contig9229:4703..49041681464193.8811238-CDS-Ecto-sp13_S_contig9229:4703..4904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9229 4704..4904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9229.20806.1prot_Ecto-sp13_S_contig9229.20806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9229 4704..4904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9229.20806.1

>prot_Ecto-sp13_S_contig9229.20806.1 ID=prot_Ecto-sp13_S_contig9229.20806.1|Name=mRNA_Ecto-sp13_S_contig9229.20806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
VNGDWVDGEEGHHVAGETLTRTYNVTNKGTTTLSNVCVIDEKFGEDCLAC
VVSDNGKLPPGDSFVCA
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mRNA from alignment at Ecto-sp13_S_contig9229:4704..4904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9229.20806.1 ID=mRNA_Ecto-sp13_S_contig9229.20806.1|Name=mRNA_Ecto-sp13_S_contig9229.20806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9229:4704..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAAACGGGGACTGGGTGGACGGCGAGGAAGGCCACCACGTAGCGGGCGA
AACGCTGACGAGGACTTATAACGTTACCAACAAGGGAACCACGACACTTT
CTAACGTTTGCGTCATTGACGAAAAGTTCGGCGAGGATTGCCTGGCGTGT
GTAGTGTCGGACAACGGCAAGCTGCCACCAGGCGACTCCTTCGTCTGCGC
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9229:4704..4904+

>mRNA_Ecto-sp13_S_contig9229.20806.1 ID=mRNA_Ecto-sp13_S_contig9229.20806.1|Name=mRNA_Ecto-sp13_S_contig9229.20806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9229:4704..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAAACGGGGACTGGGTGGACGGCGAGGAAGGCCACCACGTAGCGGGCGA
AACGCTGACGAGGACTTATAACGTTACCAACAAGGGAACCACGACACTTT
CTAACGTTTGCGTCATTGACGAAAAGTTCGGCGAGGATTGCCTGGCGTGT
GTAGTGTCGGACAACGGCAAGCTGCCACCAGGCGACTCCTTCGTCTGCGC
G
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