prot_Ecto-sp13_S_contig125.2079.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig125.2079.1
Unique Nameprot_Ecto-sp13_S_contig125.2079.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length67
Homology
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.890e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 123 bits (309), Expect = 1.020e-35
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            MD   IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    1 MDTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.600e-32
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 0
Query:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            MDN  +KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    1 MDNT-VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.350e-31
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0
Query:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            MD+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 110 bits (274), Expect = 2.310e-30
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:    3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 9.350e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:   36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 107 bits (266), Expect = 3.840e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    8 LAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            LAKV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)

HSP 1 Score: 109 bits (272), Expect = 1.690e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:  129 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A058Z784_FONAL (40S ribosomal protein S28 n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z784_FONAL)

HSP 1 Score: 104 bits (260), Expect = 3.070e-28
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0
Query:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            MDN+G+KLA+V KVLGRTG+ G  TQVRVEFLDD +RSIIRNV GPVREGDIL LLE EREARRLR
Sbjct:    1 MDNKGVKLARVTKVLGRTGSRGQCTQVRVEFLDDSSRSIIRNVIGPVREGDILTLLESEREARRLR 66          
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.620e-28
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q + LA+V +VL RTG TGNVTQVRVEFLDD  RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct:   10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI1.890e-40100.0040S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN1.020e-3589.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA1.600e-3284.8540S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA1.350e-3181.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC2.310e-3084.62Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
A0A7S0CCP2_9STRA9.350e-3079.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K3WAC4_GLOUD3.840e-2989.83Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
K0SWS9_THAOC1.690e-2880.88Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A058Z784_FONAL3.070e-2880.3040S ribosomal protein S28 n=1 Tax=Fonticula alba T... [more]
A0A2R5G0Q3_9STRA3.620e-2880.9540S ribosomal protein S28 n=1 Tax=Hondaea fermenta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..66
e-value: 1.0E-35
score: 123.4
NoneNo IPR availablePRODOMPD005541coord: 6..47
e-value: 2.0E-12
score: 168.0
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 5..65
e-value: 1.2E-32
score: 111.7
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..66
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..66
score: 19.809
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig125contigEcto-sp13_S_contig125:23369..25846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig125.2079.1mRNA_Ecto-sp13_S_contig125.2079.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig125 23343..26751 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig125.2079.1 ID=prot_Ecto-sp13_S_contig125.2079.1|Name=mRNA_Ecto-sp13_S_contig125.2079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DILCLLEWEREARRLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR012340NA-bd_OB-fold