mRNA_Ecto-sp13_S_contig125.2079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI) HSP 1 Score: 135 bits (339), Expect = 4.710e-36 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3
Query: 27 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN) HSP 1 Score: 123 bits (308), Expect = 1.710e-31 Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 3
Query: 27 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MD IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 1 MDTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.740e-28 Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 3
Query: 27 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MDN +KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 1 MDNT-VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.500e-27 Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 3
Query: 27 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MD+Q +KL KV V RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct: 1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC) HSP 1 Score: 109 bits (273), Expect = 2.240e-26 Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 3
Query: 36 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA) HSP 1 Score: 109 bits (272), Expect = 8.970e-26 Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 36 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 224
Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD) HSP 1 Score: 106 bits (265), Expect = 3.240e-25 Identity = 56/67 (83.58%), Postives = 56/67 (83.58%), Query Frame = 3
Query: 27 MDNQ-GIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MD Q LAKV VLGRTGNTGNVTQVRVEFL D R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 1 MDQQRDYMLAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC) HSP 1 Score: 110 bits (275), Expect = 4.290e-25 Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 3
Query: 15 QAYTMDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 224
Q + +Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 122 QLLSSQDQPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.010e-24 Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 18 AYTMDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
A T Q + LA+V +VL RTG TGNVTQVRVEFLDD RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct: 4 APTSATQAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Match: A0A058Z784_FONAL (40S ribosomal protein S28 n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z784_FONAL) HSP 1 Score: 104 bits (259), Expect = 2.320e-24 Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 3
Query: 27 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 224
MDN+G+KLA+V KVLGRTG+ G TQVRVEFLDD +RSIIRNV GPVREGDIL LLE EREARRLR
Sbjct: 1 MDNKGVKLARVTKVLGRTGSRGQCTQVRVEFLDDSSRSIIRNVIGPVREGDILTLLESEREARRLR 66 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig125.2079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig125.2079.1 >prot_Ecto-sp13_S_contig125.2079.1 ID=prot_Ecto-sp13_S_contig125.2079.1|Name=mRNA_Ecto-sp13_S_contig125.2079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGback to top mRNA from alignment at Ecto-sp13_S_contig125:23343..26751+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig125.2079.1 ID=mRNA_Ecto-sp13_S_contig125.2079.1|Name=mRNA_Ecto-sp13_S_contig125.2079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3409bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:23343..26751+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig125:23343..26751+ >mRNA_Ecto-sp13_S_contig125.2079.1 ID=mRNA_Ecto-sp13_S_contig125.2079.1|Name=mRNA_Ecto-sp13_S_contig125.2079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:23343..26751+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |