mRNA_Ecto-sp13_S_contig125.2077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig125.2077.1
Unique NamemRNA_Ecto-sp13_S_contig125.2077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig125.2077.1 vs. uniprot
Match: D7FRM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM7_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 7.290e-134
Identity = 191/202 (94.55%), Postives = 193/202 (95.54%), Query Frame = 1 
Query:    1 MVIADSDRFKGIRRDTLHNEVDGCFDDLEEFEDRIETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSS-QRPKEPRPLPEDGETTVVQLVRRITGAVQPVLDSLATPLRARKKEMGGTITEKQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKTYIMQNAEMYARLKKRHTGMAEEGYFPPTMC 603
            MV ADSDRFKGIRRDTLHNEVDGCFDDLEEFEDR ETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSS QRPKEPRPLPEDGET VVQLVRRITGAVQPVL SL TPL ARKKEMGGTITE+QCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAK Y+MQNAEMY RLKKRHTGMAEEGYFPPTMC
Sbjct:    1 MVTADSDRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKMYVMQNAEMYVRLKKRHTGMAEEGYFPPTMC 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig125.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM7_ECTSI7.290e-13494.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig125contigEcto-sp13_S_contig125:15081..16874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002470.1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462666.6655426-CDS-Ecto-sp13_S_contig125:15080..152011681462666.6655426-CDS-Ecto-sp13_S_contig125:15080..15201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig125 15081..15201 +
1681462666.6748564-CDS-Ecto-sp13_S_contig125:15803..160581681462666.6748564-CDS-Ecto-sp13_S_contig125:15803..16058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig125 15804..16058 +
1681462666.6855102-CDS-Ecto-sp13_S_contig125:16644..168741681462666.6855102-CDS-Ecto-sp13_S_contig125:16644..16874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig125 16645..16874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig125.2077.1prot_Ecto-sp13_S_contig125.2077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig125 15081..16874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig125.2077.1

>prot_Ecto-sp13_S_contig125.2077.1 ID=prot_Ecto-sp13_S_contig125.2077.1|Name=mRNA_Ecto-sp13_S_contig125.2077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MVIADSDRFKGIRRDTLHNEVDGCFDDLEEFEDRIETSPQYRVTHQECVL
LNRVLSDKSTLPSACFVPPGAEAAARRASSSQRPKEPRPLPEDGETTVVQ
LVRRITGAVQPVLDSLATPLRARKKEMGGTITEKQCQALADYLSPSVGGG
YLLPTACFGLLKPPDEEQAKTYIMQNAEMYARLKKRHTGMAEEGYFPPTM
C*
back to top

mRNA from alignment at Ecto-sp13_S_contig125:15081..16874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig125.2077.1 ID=mRNA_Ecto-sp13_S_contig125.2077.1|Name=mRNA_Ecto-sp13_S_contig125.2077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:15081..16874+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCATCGCCGACAGTGACCGTTTCAAGGGCATTCGGCGTGATACCCT
GCACAACGAGGTGGACGGATGCTTCGACGACCTTGAGGAGTTCGAAGACC
GCATCGAAACATCTCCACAATGTAAGTCAGTCTGTCGCATGCTTGGGTCA
AGCTAGAGAGCGGACCAAGTCGATAGAGGCATGCGCCTTTTCTTCATGTC
AAAAGACGATGAACAGGCGCTCCAGAAAAATTTTAGTGTGGAGACGTTTG
CGAATGTTGATGGCTTCGACTTCATGGTCTTCCCCAGTGAAGCTTATTGT
ATCGAGAGTTTCGGGGTGTTGCCGGTGTAAGTCTCGATAATGATCCGTGG
GCTTGGGGTGAAGAACTGAATGGTGTTACTTGGAAATCCGTGTAGTTTGA
TTGTAGACTTTTAATCATGCAATGTGTTGCGTAGAACGGCTTAAAAGCGT
AGGCTTCAAGCCTTTTGAGGACCGCAACCGGAGCTCCAGAAGATCTTGCT
CAAGAGGTGAACAAAAAGTGCTCCCCGCACCCCGCAATAAAGCATCATCT
ATGCTTACCGCACCGCAATAACGGCAATATCTACATGTTTGCCAACTTCG
TTCGTTTTGTTGCTCTTCGAACCGAATCATTTGAACCCCGATTTGATGCA
CGGACAAAATTTCCTATTTTGTTTCGTTTTTTGACGCTCTTCAGCCCATT
CATTTGAACCCACACACCCACAGACCGGGTTACCCACCAGGAGTGTGTGT
TGCTTAACCGTGTCCTCTCGGACAAGTCCACGCTCCCATCGGCCTGCTTC
GTGCCGCCGGGTGCTGAAGCAGCGGCACGGAGAGCCTCCTCCTCGCAGAG
GCCCAAAGAACCCAGGCCGCTGCCGGAGGACGGCGAGACCACCGTGGTGC
AGCTCGTGCGGCGAATTACGGGGGCCGTGCAACCGGTTCTCGACAGCCTC
GCTACCCCTTTGCGCGCGCGCAAGAAAGGTGTGGATATTCTGCAAGCAAC
AAGGACGCCGCGTCGTGGCAGCATGGGTGTCTGCCGTCTTCTGAAGACGA
AATGGCACAGCAACGCAACAGCCCCTCCCCAACACCTACTCGTGCTTGTT
GCTGTCATGCTGATACGCAGTTCTCAAGTTGCGTCTGTGGTTCGTTGTTT
TCACAGTTACTCGTGGAGGGCCAATGCAGTACATCCAGCAGTATACCCTG
CAACACGAGTTCCTCTGTAGTACTGTAGAGGGTGCAGTGTTCCCTCACCG
AAACGAACGATCGCATATGAACACTTGCGTGAGGTGACTCCACCATGATC
GAGGCATGCGGAAATATCCATCCGACGTTCCAGCGAGTTCGTCCTGCTAC
TGCAATACGGGCACCACGCACAAAATACATTCCAAGTGCTCACGACCCCT
TCCTTCCACTTGATACCGCCTCACTCCCCGTATTTTTGTGCCCCTTTGCT
GCTTGATCCCGTTCCTTGCTCGTTGCATCTCTGTCCCGCTTGCTTTGGCC
GTGTGCCTCTCTTCCCCCCGGCCCTCTCCTTCACCCACCCTCCCTTCTCA
CGGTCTCTGGGCAGAGATGGGTGGAACGATAACAGAGAAACAGTGCCAGG
CCCTAGCCGACTACCTCTCCCCTAGCGTCGGCGGGGGTTACCTGTTGCCG
ACAGCGTGCTTCGGCCTCCTCAAGCCTCCTGACGAGGAGCAGGCCAAGAC
ATACATCATGCAAAACGCCGAGATGTATGCACGCCTCAAGAAGCGACACA
CTGGAATGGCAGAGGAGGGCTATTTCCCCCCCACGATGTGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig125:15081..16874+

>mRNA_Ecto-sp13_S_contig125.2077.1 ID=mRNA_Ecto-sp13_S_contig125.2077.1|Name=mRNA_Ecto-sp13_S_contig125.2077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:15081..16874+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCATCGCCGACAGTGACCGTTTCAAGGGCATTCGGCGTGATACCCT
GCACAACGAGGTGGACGGATGCTTCGACGACCTTGAGGAGTTCGAAGACC
GCATCGAAACATCTCCACAATACCGGGTTACCCACCAGGAGTGTGTGTTG
CTTAACCGTGTCCTCTCGGACAAGTCCACGCTCCCATCGGCCTGCTTCGT
GCCGCCGGGTGCTGAAGCAGCGGCACGGAGAGCCTCCTCCTCGCAGAGGC
CCAAAGAACCCAGGCCGCTGCCGGAGGACGGCGAGACCACCGTGGTGCAG
CTCGTGCGGCGAATTACGGGGGCCGTGCAACCGGTTCTCGACAGCCTCGC
TACCCCTTTGCGCGCGCGCAAGAAAGAGATGGGTGGAACGATAACAGAGA
AACAGTGCCAGGCCCTAGCCGACTACCTCTCCCCTAGCGTCGGCGGGGGT
TACCTGTTGCCGACAGCGTGCTTCGGCCTCCTCAAGCCTCCTGACGAGGA
GCAGGCCAAGACATACATCATGCAAAACGCCGAGATGTATGCACGCCTCA
AGAAGCGACACACTGGAATGGCAGAGGAGGGCTATTTCCCCCCCACGATG
TGCTGA
back to top