mRNA_Ecto-sp13_S_contig125.2076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig125.2076.1
Unique NamemRNA_Ecto-sp13_S_contig125.2076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig125.2076.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 2.320e-122
Identity = 238/241 (98.76%), Postives = 241/241 (100.00%), Query Frame = 1 
Query:    1 MSDQATDKHALADDGEVGIEEEVRDFAARFARLVVSRAFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 723
            MSDQATDK+A+ADDGEVGIEEEVRDFAARFARLVVSR+FREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL
Sbjct:    1 MSDQATDKNAVADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig125.2076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM6_ECTSI2.320e-12298.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig125contigEcto-sp13_S_contig125:11303..12353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size726
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002480.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462666.6253476-CDS-Ecto-sp13_S_contig125:11302..115271681462666.6253476-CDS-Ecto-sp13_S_contig125:11302..11527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig125 11303..11527 -
1681462666.6356-CDS-Ecto-sp13_S_contig125:11852..123531681462666.6356-CDS-Ecto-sp13_S_contig125:11852..12353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig125 11853..12353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig125.2076.1prot_Ecto-sp13_S_contig125.2076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig125 11303..12353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig125.2076.1

>prot_Ecto-sp13_S_contig125.2076.1 ID=prot_Ecto-sp13_S_contig125.2076.1|Name=mRNA_Ecto-sp13_S_contig125.2076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MSDQATDKHALADDGEVGIEEEVRDFAARFARLVVSRAFREGGGAAAADS
GGGSGSEGGVSATTAAAASTTSQPGGAAAAAAAAASGDSGRNPGGSSSLR
PGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKL
HALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFG
LGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL*
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mRNA from alignment at Ecto-sp13_S_contig125:11303..12353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig125.2076.1 ID=mRNA_Ecto-sp13_S_contig125.2076.1|Name=mRNA_Ecto-sp13_S_contig125.2076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:11303..12353- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGATCAAGCAACAGACAAACACGCGTTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCCGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACAGC
GGCGGCGGTAGTGGCAGCGAAGGTGGCGTCAGCGCTACAACCGCGGCGGC
GGCCTCCACGACTTCACAGCCAGGAGGCGCTGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCTTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCTTTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTATGTGTGTGTGTGTTGTGTGTGTTTTCCGTTGACCTCGCTAGCCGGC
TGACCAAGAAGTTACGGGAGTGGTTTCGCGGGACAACAGTTTGCGGGCTC
CCCTCGCAAGTGTATGTGTGTTTCTATGTTAGACGACAATTTAGGTGCAT
ACGAGCCGCAGCCGGCTGTCAGGTAAGCTGCGCTTTCGGTCGCTGCTGAG
TACGTCAACAACTAAATACTTGCAGAGAACGACGCTAGTTTAACTACTGT
AGTAATGCTCTTGATGAAGCAGTGGTAGTAATGCTCTTGATGAAGCAGTG
CTGCTGTCCTCCCAATCCCTCGACAGGTGGACGCGACGGTCAAGCGGATG
GAGAAGGCCGTTTACGATCTCGAGGAGATGAGAAAGGAGCAGGTCGACAC
GAGAGCCCCGCAGGGTTCGTTTGGGCTGGGGTTGGCCCTGGGGGCCGGGC
TGTGGTTCCCTCAGATGAAAGAGAAGGGCGTCACCGTTCCGGAGGTCTTC
GACACAGACAAGCTCTTCCGAGTCGAGGAAGGTGGTTTGGCTCCTCTTTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig125:11303..12353-

>mRNA_Ecto-sp13_S_contig125.2076.1 ID=mRNA_Ecto-sp13_S_contig125.2076.1|Name=mRNA_Ecto-sp13_S_contig125.2076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig125:11303..12353- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGATCAAGCAACAGACAAACACGCGTTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCCGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACAGC
GGCGGCGGTAGTGGCAGCGAAGGTGGCGTCAGCGCTACAACCGCGGCGGC
GGCCTCCACGACTTCACAGCCAGGAGGCGCTGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCTTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCTTTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTGGACGCGACGGTCAAGCGGATGGAGAAGGCCGTTTACGATCTCGAGG
AGATGAGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGTTCGTTTGGG
CTGGGGTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGATGAAAGAGAA
GGGCGTCACCGTTCCGGAGGTCTTCGACACAGACAAGCTCTTCCGAGTCG
AGGAAGGTGGTTTGGCTCCTCTTTGA
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