mRNA_Ecto-sp13_S_contig10182.207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10182.207.1
Unique NamemRNA_Ecto-sp13_S_contig10182.207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 602 bits (1552), Expect = 1.330e-209
Identity = 353/450 (78.44%), Postives = 369/450 (82.00%), Query Frame = 1
Query:    1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDVPGPWSHGNFSNGVPLSSKGSHNTSTILTSLTSESSPTQLGWAGGGSAGHIGRVTGCKPGQGVVQALLRLAAVEIGVFRGVMRFM 1350
            SSREATRRLLGGD GGKLVYDYVNMVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGHFQILKILLAAGANPNVADNHAVT                                       VYNRIGVTRLLLDASASSLEVRDS+HGITPLAWASKFSF TMLRILLS GADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXX  DS DNEGADAGS IG GDPPRH G QSPPILPGAVN++GWLKNETLATRIQLALS ARKDRTWRRRGWLVVLARRQAMAMAVVPGTT   SKT VSG+KS S+MTIPRIL TTG+DADTGRRV+ A+HQEGTRQGIVR SSD+PH      SNDVPG WSHGN  N VPL SKGSHNT+ I TS  SESS  QLGWAGGGSAGHI +VTG  PGQGVVQALL LAAVE+GVFRGVMR++
Sbjct:  204 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHIYDTHARTDDSYTPLHLAV-----------------VYNRIGVTRLLLDASASSLEVRDSFHGITPLAWASKFSFATMLRILLSMGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSAIGLGDPPRHKGPQSPPILPGAVNRTGWLKNETLATRIQLALSNARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKTSVSGNKSDSKMTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPH------SNDVPGGWSHGNLGNSVPLQSKGSHNTA-IFTSQISESSSMQLGWAGGGSAGHIDKVTGWTPGQGVVQALLGLAAVEVGVFRGVMRYI 629          
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 3.940e-161
Identity = 328/370 (88.65%), Postives = 335/370 (90.54%), Query Frame = 1
Query:    1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKT---FVSGDK-SHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDV 1098
            SSREATRRLLGGD GGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADN AVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YNRIGVTRLLLDASASSLEVRDSYHGITPLAWASK SFT MLR+LLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXX  DSADNEGADAGS IG GDPPRHAG QSPPIL GAVN+ G L NE LATRI+LALS+ARKDRTWRRRGWLVVLARRQAMAMAVVPGTT   SK    FV G+K S SRMT PRIL TTG+DADTGRRVY A HQEGTRQG    SSD+PHGNEVD SND 
Sbjct:  213 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNLAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKLSFTLMLRVLLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSADNEGADAGSAIGLGDPPRHAGPQSPPILLGAVNEIGRLNNEELATRIRLALSKARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKAYYAFVRGNKKSESRMTTPRILATTGVDADTGRRVYLAIHQEGTRQGNGSSSSDLPHGNEVDKSNDA 582          
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 1.360e-146
Identity = 313/455 (68.79%), Postives = 335/455 (73.63%), Query Frame = 1
Query:    1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDVPGPWSHGNFSNGVPLSSKGSHN-----TSTILTSLTSESSPTQLGWAGGGSAGHIGRVTGCKPGQGVVQALLRLAAVEIGVFRGVMRFM 1350
            SSREATRRLLGGD GGKLVYDYVNMVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGHFQILKILLAAGANPNVADNHAVT                XXXXXXXXXXXXXXXXXXXXXXX   RIGVTRLLLDASASSLEVRDS+HGITPLAWASK SFTTMLRILLS GADVNSRSP XXXXXXXXXXXXXXXXXXXXXXXXX  DS DNEGADAGSV G GDPP H G QSPPILPGA NQ+G  KN  LATRIQLALS+ARKDRTWRRRGWLVVLARRQAM MAVVPGTT   SKT+V G++ H RMTIPRI   TG+D            Q+ TR      S+D   G   +T      P  H   ++ V      S +     T T  TSL S  S  QLG  GG   G++G  TG  P +G ++ LL LAA+E GVFR VMRF+
Sbjct:  211 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXRIGVTRLLLDASASSLEVRDSFHGITPLAWASKLSFTTMLRILLSMGADVNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSVTGLGDPPGHTGPQSPPILPGAANQTGRPKNGALATRIQLALSKARKDRTWRRRGWLVVLARRQAMTMAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQKRTRVANETFSAD---GGGAETCR-KENPDLHCKQTSIVRGEGASSFHRFFDGTGTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERGAIETLLWLAAMEEGVFRNVMRFV 661          
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7L8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L8_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.690e-46
Identity = 95/154 (61.69%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  499 MLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRI 960
            MLR+LL+ GADVNSRS A                          PD  DN+GADAGSV G GDPPRH G QSPPILPGAVN++G LKNE LATRI+LALS+ARKDRTWRRRGWLVVLA RQAMAM +VP TT   SKT   G +  SRMT+PR+
Sbjct:    1 MLRVLLNAGADVNSRSSAGSTPLYWACRLNTADIVECLLLAGADPDYLDNQGADAGSVTGLGDPPRHTGRQSPPILPGAVNETGRLKNEALATRIRLALSKARKDRTWRRRGWLVVLATRQAMAMNMVPNTT-RASKTHARGIRRVSRMTMPRV 153          
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L7_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 8.290e-41
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVT 258
            SSREATRRLLGGD GGKLVYDYVNMVSQ+VATVYGLV+GGAFLDWQDSHRRR+PLHRAV FGH QIL+ILL  GANPNVADN AVT
Sbjct:   75 SSREATRRLLGGDRGGKLVYDYVNMVSQNVATVYGLVKGGAFLDWQDSHRRRSPLHRAVNFGHSQILQILLTTGANPNVADNLAVT 160          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L5T2_9PHAE1.330e-20978.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7M3_ECTSI3.940e-16188.65Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L664_9PHAE1.360e-14668.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L8_ECTSI1.690e-4661.69Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G7L7_ECTSI8.290e-4188.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10182contigEcto-sp13_S_contig10182:3..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score478.8
Seed ortholog evalue2.8e-132
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
Model size1353
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-22_001840.1
Cds size1353
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.3451252-CDS-Ecto-sp13_S_contig10182:2..13551681462513.3451252-CDS-Ecto-sp13_S_contig10182:2..1355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10182 3..1355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10182.207.1prot_Ecto-sp13_S_contig10182.207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10182 3..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10182.207.1

>prot_Ecto-sp13_S_contig10182.207.1 ID=prot_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp
SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHR
RRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEA
AELLCAGADTHARTNDSYTPLHLAVVYNRIGVTRLLLDASASSLEVRDSY
HGITPLAWASKFSFTTMLRILLSTGADVNSRSPAGLTPLHWACRFNNADI
VDCLLLAGAHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSG
WLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCS
VSKTFVSGDKSHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRI
SSDVPHGNEVDTSNDVPGPWSHGNFSNGVPLSSKGSHNTSTILTSLTSES
SPTQLGWAGGGSAGHIGRVTGCKPGQGVVQALLRLAAVEIGVFRGVMRFM
*
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mRNA from alignment at Ecto-sp13_S_contig10182:3..1355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10182.207.1 ID=mRNA_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:3..1355+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACGGAGGAGGCAA GCTGGTCTACGATTACGTCAACATGGTCAGCCAGGACGTGGCTACCGTGT ACGGTCTGGTCCAAGGCGGGGCGTTTCTGGATTGGCAGGACAGCCACAGG AGACGCACTCCTTTGCACCGGGCGGTGTACTTTGGGCACTTCCAGATTCT CAAGATCCTACTCGCTGCTGGCGCTAATCCAAACGTCGCCGACAACCATG CCGTTACCCCGTTGCATATGGTTGCCGTGAAGGGATGCGAGGCTGAGGCT GCCGAACTGCTCTGTGCCGGAGCCGATACGCACGCACGCACGAATGACAG CTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGTCACGA GGCTGCTACTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCGATAGCTAT CACGGCATCACGCCGCTTGCATGGGCGTCCAAGTTCTCCTTCACTACCAT GTTGCGCATTTTGCTGAGCACGGGAGCCGACGTTAACTCTAGGTCTCCAG CGGGCTTGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACATC GTCGATTGCTTGCTGTTGGCGGGAGCCCACCCCGACTCTGCGGATAACGA GGGTGCCGATGCCGGCTCAGTGATTGGTTGTGGCGACCCCCCCCGCCACG CGGGACACCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATCAGTCCGGC TGGCTAAAGAATGAAACGTTGGCGACCCGCATTCAGCTGGCTCTGTCGAG AGCGAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTGCTGG CTAGGAGGCAAGCGATGGCGATGGCGGTGGTACCCGGCACTACTTGCAGC GTTTCCAAGACTTTCGTGAGTGGCGACAAGAGCCATTCTAGGATGACCAT ACCAAGGATTCTGGGGACGACAGGTTTAGACGCAGACACGGGCCGCCGCG TATATTTTGCCACCCACCAGGAAGGAACTCGGCAAGGAATTGTAAGGATA TCGAGCGATGTCCCTCACGGCAACGAAGTCGACACCAGCAACGACGTCCC CGGTCCGTGGTCACACGGAAACTTCAGCAACGGTGTGCCCCTTTCCTCTA AAGGGAGTCACAACACCAGCACCATTTTGACTTCACTAACATCTGAATCA TCACCGACGCAGCTCGGTTGGGCTGGCGGAGGTAGCGCCGGCCACATCGG CAGAGTCACTGGCTGCAAACCGGGGCAGGGAGTAGTACAGGCGCTGCTTC GGCTGGCAGCCGTGGAAATTGGTGTGTTTCGTGGTGTGATGCGCTTCATG TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10182:3..1355+

>mRNA_Ecto-sp13_S_contig10182.207.1 ID=mRNA_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:3..1355+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACGGAGGAGGCAA
GCTGGTCTACGATTACGTCAACATGGTCAGCCAGGACGTGGCTACCGTGT
ACGGTCTGGTCCAAGGCGGGGCGTTTCTGGATTGGCAGGACAGCCACAGG
AGACGCACTCCTTTGCACCGGGCGGTGTACTTTGGGCACTTCCAGATTCT
CAAGATCCTACTCGCTGCTGGCGCTAATCCAAACGTCGCCGACAACCATG
CCGTTACCCCGTTGCATATGGTTGCCGTGAAGGGATGCGAGGCTGAGGCT
GCCGAACTGCTCTGTGCCGGAGCCGATACGCACGCACGCACGAATGACAG
CTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGTCACGA
GGCTGCTACTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCGATAGCTAT
CACGGCATCACGCCGCTTGCATGGGCGTCCAAGTTCTCCTTCACTACCAT
GTTGCGCATTTTGCTGAGCACGGGAGCCGACGTTAACTCTAGGTCTCCAG
CGGGCTTGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACATC
GTCGATTGCTTGCTGTTGGCGGGAGCCCACCCCGACTCTGCGGATAACGA
GGGTGCCGATGCCGGCTCAGTGATTGGTTGTGGCGACCCCCCCCGCCACG
CGGGACACCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATCAGTCCGGC
TGGCTAAAGAATGAAACGTTGGCGACCCGCATTCAGCTGGCTCTGTCGAG
AGCGAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTGCTGG
CTAGGAGGCAAGCGATGGCGATGGCGGTGGTACCCGGCACTACTTGCAGC
GTTTCCAAGACTTTCGTGAGTGGCGACAAGAGCCATTCTAGGATGACCAT
ACCAAGGATTCTGGGGACGACAGGTTTAGACGCAGACACGGGCCGCCGCG
TATATTTTGCCACCCACCAGGAAGGAACTCGGCAAGGAATTGTAAGGATA
TCGAGCGATGTCCCTCACGGCAACGAAGTCGACACCAGCAACGACGTCCC
CGGTCCGTGGTCACACGGAAACTTCAGCAACGGTGTGCCCCTTTCCTCTA
AAGGGAGTCACAACACCAGCACCATTTTGACTTCACTAACATCTGAATCA
TCACCGACGCAGCTCGGTTGGGCTGGCGGAGGTAGCGCCGGCCACATCGG
CAGAGTCACTGGCTGCAAACCGGGGCAGGGAGTAGTACAGGCGCTGCTTC
GGCTGGCAGCCGTGGAAATTGGTGTGTTTCGTGGTGTGATGCGCTTCATG
TGA
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